| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,188,826 – 1,188,926 |
| Length | 100 |
| Max. P | 0.575608 |
| Location | 1,188,826 – 1,188,926 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 80.10 |
| Shannon entropy | 0.36006 |
| G+C content | 0.40921 |
| Mean single sequence MFE | -19.48 |
| Consensus MFE | -12.38 |
| Energy contribution | -12.50 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1188826 100 + 27905053 GUGUGUAUCAUAGCGCACUUAGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCACCUCAUUUACUAACAAUGUACA ((((((......))))))...(((((((((.....))))))((((.........))))................)))....................... ( -21.90, z-score = -2.07, R) >droSim1.chr3R 1218757 100 + 27517382 GUGUGAAUCAUGGCGCACUUGGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCACCUCAUUUACUAACAAUGAACA ..((((((...((.((....(..(((((((.....)))))))..).................((((.....)))))).))..))))))............ ( -22.80, z-score = -1.54, R) >droSec1.super_6 1307736 100 + 4358794 GUGUGAAUCAUGGCGCACUCAGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCACCUCAUUUACUAACAAUGAACA ..((((((...((.((.......(((((((.....)))))))....................((((.....)))))).))..))))))............ ( -22.20, z-score = -1.71, R) >droYak2.chrU 5174055 97 + 28119190 GUGUGAAUCAUAGCCCACUUAACCAGAACCAAACAGGUUUUAAUCUCAAUUCA-AUUCU--UCGUAAACUUUACGGCACCUCUUUUACUGACACUGAACA ..(((((.....(((.........((((((.....))))))............-.....--..(((.....))))))......)))))............ ( -11.60, z-score = 0.02, R) >droAna3.scaffold_13340 19698426 96 - 23697760 --GUCGGUCUGAACUA--UAGACCAGAACCAAACAGGUUCUCUAUUCCCUUCACGUUUGGACCAUAAAUUUUAUGAUUUCGCAUUUACUAACAAUAAACA --...((((..(((.(--((((...(((((.....)))))))))).........)))..))))..................................... ( -18.90, z-score = -2.25, R) >consensus GUGUGAAUCAUAGCGCACUUAGCCAGAACCAAACUGGUUCUGAACUCAAUUCACGUUCCGAUCGUAAACUUUACGGCACCUCAUUUACUAACAAUGAACA ..((((((....((.........(((((((.....)))))))....................((((.....)))))).....))))))............ (-12.38 = -12.50 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:18 2011