| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,188,012 – 1,188,107 |
| Length | 95 |
| Max. P | 0.938326 |
| Location | 1,188,012 – 1,188,107 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 91.58 |
| Shannon entropy | 0.11600 |
| G+C content | 0.32697 |
| Mean single sequence MFE | -18.91 |
| Consensus MFE | -16.15 |
| Energy contribution | -16.15 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1188012 95 + 27905053 CGAUGAGUUUAUGGUUCAAUGACCAUAAAGUUAUCAAAAGGCGAUGAAACAGCACUGUAACUACGAGAUAACGACUCAUUUUUAGAAUAAUGAUG .(((((((((((((((....)))))))..((((((...((((.........)).))((....))..))))))))))))))............... ( -21.10, z-score = -2.52, R) >droSim1.chr3R 1217942 95 + 27517382 CUAUGAGUUUAUGGUUCACUGACCAUAAAGUUAUCAAGAGGCGAUGAAAUAACAAUGUAACUACGAGAUAACGACUCAUUUUUAGGAUAAUGAUG ..((((((((((((((....)))))))..((((((..((((((.((......)).)))..)).)..)))))))))))))................ ( -19.40, z-score = -1.76, R) >droSec1.super_6 1306924 91 + 4358794 CUAUGAGUUUAUGGUUCACUGACCAUAAAGUUAUCAAAA----AUAAAAUAACACUGUAACUACGAGAUAACGACUCAUUUUUAGGAUAAUGAUG ..((((((((((((((....)))))))..((((((....----.......................)))))))))))))................ ( -16.23, z-score = -1.75, R) >consensus CUAUGAGUUUAUGGUUCACUGACCAUAAAGUUAUCAAAAGGCGAUGAAAUAACACUGUAACUACGAGAUAACGACUCAUUUUUAGGAUAAUGAUG ..((((((((((((((....)))))))..((((((...............................)))))))))))))................ (-16.15 = -16.15 + -0.00)
| Location | 1,188,012 – 1,188,107 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 91.58 |
| Shannon entropy | 0.11600 |
| G+C content | 0.32697 |
| Mean single sequence MFE | -16.81 |
| Consensus MFE | -15.38 |
| Energy contribution | -15.38 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.938326 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1188012 95 - 27905053 CAUCAUUAUUCUAAAAAUGAGUCGUUAUCUCGUAGUUACAGUGCUGUUUCAUCGCCUUUUGAUAACUUUAUGGUCAUUGAACCAUAAACUCAUCG ................((((((.((((((.((..(..(((....)))..)..))......)))))).(((((((......))))))))))))).. ( -17.20, z-score = -1.94, R) >droSim1.chr3R 1217942 95 - 27517382 CAUCAUUAUCCUAAAAAUGAGUCGUUAUCUCGUAGUUACAUUGUUAUUUCAUCGCCUCUUGAUAACUUUAUGGUCAGUGAACCAUAAACUCAUAG ................((((((.((((((..(..((.....((......))..))..)..)))))).(((((((......))))))))))))).. ( -17.30, z-score = -2.34, R) >droSec1.super_6 1306924 91 - 4358794 CAUCAUUAUCCUAAAAAUGAGUCGUUAUCUCGUAGUUACAGUGUUAUUUUAU----UUUUGAUAACUUUAUGGUCAGUGAACCAUAAACUCAUAG ................((((((.((((((..((((.............))))----....)))))).(((((((......))))))))))))).. ( -15.92, z-score = -1.66, R) >consensus CAUCAUUAUCCUAAAAAUGAGUCGUUAUCUCGUAGUUACAGUGUUAUUUCAUCGCCUUUUGAUAACUUUAUGGUCAGUGAACCAUAAACUCAUAG ................((((((.((((((...............................)))))).(((((((......))))))))))))).. (-15.38 = -15.38 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:17 2011