| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,135,582 – 1,135,637 |
| Length | 55 |
| Max. P | 0.707516 |
| Location | 1,135,582 – 1,135,637 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 78.73 |
| Shannon entropy | 0.37759 |
| G+C content | 0.39938 |
| Mean single sequence MFE | -13.26 |
| Consensus MFE | -9.68 |
| Energy contribution | -9.60 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707516 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1135582 55 - 27905053 UUUGACUCACAUCAGAAGUCGAUUAGCUAAAGGUGGUAUUCUACCUUUGGUCUGA .(((((((......).))))))((((((((((((((....)))))))))).)))) ( -19.70, z-score = -3.73, R) >droSim1.chr3R_random 199068 55 - 1307089 UGUGAUUCACCUUGGAGGUCUAUUAGCUGAAGGUGGUAUUCUACCUUUGGUCUGA ..((((..(((.....)))..))))((..(((((((....)))))))..)).... ( -17.00, z-score = -1.95, R) >droSec1.super_6 1256893 55 - 4358794 UGUGAUUCACCUUGGAAGUCGAUUAGCUGAAGGUGGUAUUCUACCUUUGGUCUGA ..((((((......).))))).(((((..(((((((....)))))))..).)))) ( -15.70, z-score = -1.78, R) >droYak2.chr3R 1516741 55 - 28832112 UGUUACUUACAUUAUAAGUAGAUUGUUUAAACUUGGGAUUCUACCUUUGGUCUGA ..(((((((.....))))))).....(((.(((.(((......)))..))).))) ( -6.40, z-score = 0.71, R) >droEre2.scaffold_4770 1410765 53 - 17746568 --UGACUCAUAUUAGCAGUCGAUUGCUUACAGAUGGUAUUCCACCUUUGCUCUGA --.(((((......).)))).........((((.(((.....))).....)))). ( -7.50, z-score = 0.39, R) >consensus UGUGACUCACAUUAGAAGUCGAUUAGCUAAAGGUGGUAUUCUACCUUUGGUCUGA ...((((.........))))..((((((((((((((....)))))))))).)))) ( -9.68 = -9.60 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:15 2011