| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,134,891 – 1,134,983 |
| Length | 92 |
| Max. P | 0.827920 |
| Location | 1,134,891 – 1,134,983 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 70.86 |
| Shannon entropy | 0.45311 |
| G+C content | 0.30968 |
| Mean single sequence MFE | -19.68 |
| Consensus MFE | -8.98 |
| Energy contribution | -8.97 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827920 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1134891 92 + 27905053 UAUCGGAUAACAUGAACAUGUGUG--UAUGUAUAGAUUCUUAUACGAGCAUAUGCAUAUGAGAGUGCCUAAUUAAAUUCACAGUGUAUAAAAAU---- .........((((...((((((((--(((((....((....))....))))))))))))).((((..........))))...))))........---- ( -16.90, z-score = -0.18, R) >droYak2.chr3R 1516055 85 + 28832112 UAUUGGAUAACAUUAACUUGUU----------UAGACUCUUAUAUACUCGUAUGUAUGGGAGAAGGCU---UAAAAUUCCCAGUGUAAACAAAUGACG .................(((((----------((.((...((((((....))))))((((((......---.....)))))))).)))))))...... ( -15.90, z-score = -0.92, R) >droSec1.super_6 1256238 84 + 4358794 UAUCGGAUAACAUGAGCAUGUA----UGUGUAUAGAUUCUUAUACGAGUCUAUAUAUAAGAAGGC------UUAAAUCCGCAGUGUAUAAAAAU---- ...(((((....(((((.....----(((((((((((((......))))))))))))).....))------))).)))))..............---- ( -24.10, z-score = -4.02, R) >droSim1.chr3R_random 198405 88 + 1307089 UAUCGGAUAACAUGAGCAUGUACAUCUAUGUAUAGAUUCUUAUACGAGUCUAUAUAUAAGAAGAC------UUAAAUCCGCAGUGUAUAAAAAU---- ...(((((.((((....))))...(((((((((((((((......)))))))))))).)))....------....)))))..............---- ( -21.80, z-score = -3.20, R) >consensus UAUCGGAUAACAUGAACAUGUA____UAUGUAUAGAUUCUUAUACGAGCCUAUAUAUAAGAAAAC______UUAAAUCCGCAGUGUAUAAAAAU____ ....((((.((((....))))...............((((((((((......)))))))))).............))))................... ( -8.98 = -8.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:14 2011