| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,130,299 – 1,130,429 |
| Length | 130 |
| Max. P | 0.593950 |
| Location | 1,130,299 – 1,130,429 |
|---|---|
| Length | 130 |
| Sequences | 4 |
| Columns | 137 |
| Reading direction | forward |
| Mean pairwise identity | 74.59 |
| Shannon entropy | 0.39965 |
| G+C content | 0.37516 |
| Mean single sequence MFE | -30.95 |
| Consensus MFE | -23.17 |
| Energy contribution | -23.42 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.24 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1130299 130 + 27905053 AAUCGAGUGGGUUCGUGGAAAUAUAUGAGUGAGAAUAGAGGAACACACCUGCCUUAUUUCUCUUCCUUUUCAUAAGUUUUCAACACCAUGCUACUUGAG-------UUGGUAUUUUCCGUGGAAAGUUAAAAAGUUA ..((((((((((...(((((((.((((((.(((((..((((..........))))..)))))......)))))).)))))))..)))....))))))).-------.....((((((....)))))).......... ( -29.60, z-score = -0.52, R) >droSim1.chr3R 1154942 126 + 27517382 UAUCGAGUAGGGUUGUGGAAAUAUAUGGGUGAGAAUUGAGGAACAC--CUGGCUUAUUUCUCUUCUUUUUCAUAAGUUUUCAACACCAUGCUACUUGAG-------UUGGUAUUUUCCCCUGAAAGUUACUGUUC-- ..(((((((((((..(((((((.((((((.(((((..((((((...--........))))))))))).)))))).)))))))..)))...)))))))).-------..(((((((((....))))).))))....-- ( -33.10, z-score = -1.34, R) >droSec1.super_6 1251901 123 + 4358794 UAUCGAGUAGGGUUGUGGAAAUAUAUGGGUGAGAAUUGAGGAAU-----UGGCAUAUUUCUCUUCUUUUUCAUAAGUUUUCAACACCAUGCUACUUGAG-------UUGCUAUUUUCCCCUGAAAGUUACUGUUC-- ..(((((((((((..(((((((.((((((.(((((..(((((((-----......)))))))))))).)))))).)))))))..)))...))))))))(-------(....((((((....)))))).)).....-- ( -34.20, z-score = -2.38, R) >droEre2.scaffold_4770 1405220 130 + 17746568 AGUCGGCUGAGGUCGUAGAAAUAAAUAG----GAAUGGAGGGACAC--UUGGCUCACUUGUUUUAUUUCUUAUAUAUUUUUAACACCAUCUCACUUGAGCCUCUUUUUGGCAUUUUCCCUGGAAAGCUAUCUAUCA- ..((((.((((((..((((((((.((((----(((....((((((.--.((...))..))))))..))))))).)))))))).....)))))).))))(((.......))).(((((....)))))..........- ( -26.90, z-score = 0.34, R) >consensus AAUCGAGUAGGGUCGUGGAAAUAUAUGGGUGAGAAUUGAGGAACAC__CUGGCUUAUUUCUCUUCUUUUUCAUAAGUUUUCAACACCAUGCUACUUGAG_______UUGGUAUUUUCCCCGGAAAGUUACUGAUC__ ..(((((((((((..(((((((.((((((.(((((..((((((.............))))))))))).)))))).)))))))..)))...)))))))).............((((((....)))))).......... (-23.17 = -23.42 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:12 2011