| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,115,919 – 1,116,023 |
| Length | 104 |
| Max. P | 0.645373 |
| Location | 1,115,919 – 1,116,023 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 65.69 |
| Shannon entropy | 0.63183 |
| G+C content | 0.49706 |
| Mean single sequence MFE | -26.49 |
| Consensus MFE | -11.32 |
| Energy contribution | -12.38 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.645373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1115919 104 - 27905053 ACCCAUCAUUAGUGGCCAUGAGUGACCAAACACCAACUAACAAUCGCUUCCGAUGCGAACU-UGGCUUUAAGAAACUUCCGCUGAGCCGAAAUGGCCUGGGGGCC--------- .((((........(((((((.(((......)))).........((((.......))))..(-((((((...(.......)...))))))).))))))))))....--------- ( -28.00, z-score = -0.81, R) >droAna3.scaffold_13340 23298549 106 - 23697760 ----ACGUACAACUGCUAGGUGAAACGUCAUCUGA----AGAUUUGCUUCCGUUGUGGACUAUUAAUUGUUAAGACUUCCGCGGCGCUAUAAUGGUUUGAAGGCAAAAAUAAAG ----........((..(((((((....))))))).----)).(((((((.(((((((((...(((.....)))....))))))))(((.....)))..).)))))))....... ( -22.70, z-score = -0.10, R) >droEre2.scaffold_4770 1390784 93 - 17746568 ----ACCCGUGGUGGCCAUGAGUGACCGCA-----------AAUCGCUUCCGAUGCAAACU-CGGCUUAU-AAAACUUCCGCCGAGCCGAAUUGGCCC-CAAGCCAUUGAU--- ----..(.((((((((((.((((....(((-----------..(((....))))))..)))-)(((((..-............)))))....))))).-...))))).)..--- ( -26.24, z-score = -1.12, R) >droYak2.chr3R 1495944 92 - 28832112 ----ACCCAUGGUGGCCUUGAGUGAC--CA-----------AAUCGGUACCGAUGCAAACU-UGGCUUAUAAAAACUUCCGCUGGGCCGGAACUACCU-CAAGCGAUAGAU--- ----......(((((((..((((...--..-----------.((((....))))....)))-)((((((.............))))))))..))))).-............--- ( -19.22, z-score = 0.92, R) >droSec1.super_6 1237272 110 - 4358794 ACCCACCAUUAGUGGCCAUGAGUGACCAAACACCAACUGACAAUCGCUUCCGAUGCGAACU-UGGCUUGUAGAAACUUCCGCUGAGCCAAAAUGACCUGGAGGCCACAGAU--- ...........((((((....((......)).(((........((((.......))))..(-(((((((..((....))..).))))))).......))).))))))....--- ( -31.40, z-score = -2.69, R) >droSim1.chr3R 1139620 110 - 27517382 ACCCACCAUUAGUGGCCAUGAGUGACCAAACACCAACUAACAAUCGCUUCCGAUGCGAACU-UGGCUUGUAGAAACUUCCGCUGAGCCAAAAUGACCUGGAGGCCACAGAU--- ...........((((((....((......)).(((........((((.......))))..(-(((((((..((....))..).))))))).......))).))))))....--- ( -31.40, z-score = -2.99, R) >consensus ____ACCAUUAGUGGCCAUGAGUGACCAAACACCA____ACAAUCGCUUCCGAUGCGAACU_UGGCUUGUAAAAACUUCCGCUGAGCCAAAAUGACCUGGAGGCCACAGAU___ ...........((((((..........................((((.......))))....((((((...............))))))............))))))....... (-11.32 = -12.38 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:07 2011