| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,106,283 – 1,106,394 |
| Length | 111 |
| Max. P | 0.589602 |
| Location | 1,106,283 – 1,106,394 |
|---|---|
| Length | 111 |
| Sequences | 8 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 69.89 |
| Shannon entropy | 0.58858 |
| G+C content | 0.38283 |
| Mean single sequence MFE | -26.43 |
| Consensus MFE | -9.24 |
| Energy contribution | -8.07 |
| Covariance contribution | -1.17 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1106283 111 - 27905053 AACGAAAACAAAUUGCAAAUCUUG-UUGUGCAUAUAAUUCUGGUCAACUGAAACUCAAACCU--GUGUCGUGACUGAAUUGCCGAGGGAAACUCCCUUGGGAAUUAUUUUCUAC-- ...(((((.....((((.(.....-.).))))..((((((.(((((...((.((........--)).)).)))))......(((((((.....))))))))))))))))))...-- ( -26.70, z-score = -2.51, R) >droAna3.scaffold_13340 23289007 103 - 23697760 AACGAAAACAAAUUGCGAAUCUUG-UUGUGGAAAUACUUCUGGUUAAACGAGAAUCGUUU----GAAUCGUGACCGAGGAGU----GGUGUUCCCCUUGAGAAUUUAUUUCG---- ..(((((..((((......(((((-..(.((((.(((((((((((..((((...((....----)).)))))))).))))))----)...)))))..))))))))).)))))---- ( -23.00, z-score = -0.45, R) >droEre2.scaffold_4770 1381688 111 - 17746568 AUCGAAAACAAAUUGUAGAUCUUG-UUAUGCAUAUAAUUCUGGUCAACUGAAACUCAAACCU--GUGUCGUGACUGAAUGGCCGAGGGAAACUCCCUUGGGAACUAUUUUCUUU-- ...((((.......((((.((...-...........((((.(((((...((.((........--)).)).)))))))))..(((((((.....))))))))).))))))))...-- ( -23.81, z-score = -0.91, R) >droYak2.chr3R 1486643 113 - 28832112 AGCGAAAACAAAUUGCAAAUUUUG-UUAUGCAUAUAAUUCUGUUCAAAUGAAUCUCAAACCUUCGUGUCGUGACUGAAUGGCCGAGGGAAACUCCCUUGGGAAUUAUUUUUUUC-- .(((..((((((........))))-)).)))..((((((((((((....))))......((((((.(((((......)))))))))))...........)))))))).......-- ( -26.30, z-score = -1.65, R) >droSec1.super_6 1227590 111 - 4358794 AACGAAAACAAAUUGCAAAUCUUG-UUGUGCAAAUAAUUCUGGUCAACUGAAACUCAAACCU--GUGUCGUGACUGAAUUGCCGAGGGAAACUCCCUUGGGAAUUAUUUUCUUC-- ...(((((....(((((.(.....-.).))))).((((((.(((((...((.((........--)).)).)))))......(((((((.....))))))))))))))))))...-- ( -27.90, z-score = -2.79, R) >droSim1.chr3R 1130009 111 - 27517382 AACGAAAACAAAUUGCAAAUCUUG-UUGUGCAUAUAAUUCUGGUCAACUGAAACUCAAACCU--GUGUCGUGACUGAAUUGCCGAGGGAAACUCCCUUGGGAAUUAUUUUCUUC-- ...(((((.....((((.(.....-.).))))..((((((.(((((...((.((........--)).)).)))))......(((((((.....))))))))))))))))))...-- ( -26.70, z-score = -2.37, R) >droPer1.super_3 2909449 113 + 7375914 AAGAAAAACAAAUGCCGAAUCUUGUUUCUAUUCUUAAAUUGGAAUGGCACUGGUUUUAAUC---GUGACGGUGUUAAUUGGGAGGGGGAAUCACUCCUGAGAUUUAUGCAUUUUCC .........((((((.(((((((....(((((((......)))))))..(..(((...(((---(...))))...)))..).(((((......))))))))))))..))))))... ( -27.50, z-score = -1.06, R) >dp4.chr2 9112468 113 + 30794189 AAGAAAAACAAAUGCCGAAUCUUGUUUCUAUUCUUAAAUUGGAAUGUCACUGGUUUUAAUC---GUGACGGUCUUAAUUGGGAGGGGGAAUCACUCCUGAGAUUUAUGCAUUUUCC .........((((((.(((((((........((((((...(((.((((((.(((....)))---)))))).)))...))))))((((......)))).)))))))..))))))... ( -29.50, z-score = -1.83, R) >consensus AACGAAAACAAAUUGCAAAUCUUG_UUGUGCAUAUAAUUCUGGUCAACUGAAACUCAAACCU__GUGUCGUGACUGAAUGGCCGAGGGAAACUCCCUUGGGAAUUAUUUUCUUC__ ...................((((.............((((.(((((...((.((..........)).)).)))))))))....(((((.....))))))))).............. ( -9.24 = -8.07 + -1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:05 2011