| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,105,270 – 1,105,340 |
| Length | 70 |
| Max. P | 0.747721 |
| Location | 1,105,270 – 1,105,340 |
|---|---|
| Length | 70 |
| Sequences | 9 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 71.14 |
| Shannon entropy | 0.55395 |
| G+C content | 0.44589 |
| Mean single sequence MFE | -12.89 |
| Consensus MFE | -9.95 |
| Energy contribution | -9.63 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.42 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747721 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1105270 70 - 27905053 CGACCGCGAGGUAAAAAUAUCAUUA-------GUGCGAACACAUGAACACAUGACUCAUGUGAUUUCC--CAGCUGUUC ..(((....)))...........((-------((..((((((((((.........)))))))..))).--..))))... ( -15.30, z-score = -1.09, R) >droSim1.chr3R 1128912 68 - 27517382 CGACCGCGAGGUAAAAACAUCAUUG-------GUGCGGCCAC--GAACACAUGACUCAUGUGAUUUCC--CAGCUGUUC ..(((....))).............-------..(((((...--(((((((((...))))))..))).--..))))).. ( -16.30, z-score = -0.22, R) >droSec1.super_6 1226480 68 - 4358794 CGACCGCGAGGUAAAAACAUCAUUG-------GUGCGGCCAC--GAACACAUGACUCAUGUGAUUUCC--CAGCUGUUC ..(((....))).............-------..(((((...--(((((((((...))))))..))).--..))))).. ( -16.30, z-score = -0.22, R) >droYak2.chr3R 1478959 68 - 28832112 CGACCGCGAGGUAUAAACAUCAUUA-------UUGCAGGCAC--GAACACAUGAUUCAUGUGAUUUUC--CAGCUGUUC ..(((....))).............-------..((.((...--(((((((((...)))))).))).)--).))..... ( -13.10, z-score = -0.18, R) >droEre2.scaffold_4770 1380715 67 - 17746568 CGACCGCGAGGUAAAAACAUCAUUA-------ACGC-GGCAC--GAACACAUGAUUCAUGUGAUUUCC--CAGCUGUUC ..(((....))).............-------..((-(((..--(((((((((...))))))..))).--..))))).. ( -16.10, z-score = -1.30, R) >droAna3.scaffold_13340 23288183 70 - 23697760 CGAUCGCGAGGUAAACAACAAAAAA-------UAAAAAACAAAAAAACACAUGAUUCAUGUGAUUUUC--CAGCUGUUC ..(((....))).............-------...............((((((...))))))......--......... ( -8.10, z-score = -0.35, R) >dp4.chr2 9111129 56 + 30794189 CCGCCGUGAGGUAAA-----------------CUAUGGCU----UAACACAUGACUCACGUGAUUUCC--CAGCUGUUU ..(((....)))(((-----------------(..(((..----...(((.((...)).))).....)--))...)))) ( -10.90, z-score = -0.30, R) >droPer1.super_3 2908078 56 + 7375914 CCGCCGUGAGGUAAA-----------------CUAUGGCU----UAACACAUGACUCACGUGAUUUCC--CAGCUGUUU ..(((....)))(((-----------------(..(((..----...(((.((...)).))).....)--))...)))) ( -10.90, z-score = -0.30, R) >droWil1.scaffold_181130 3836563 79 + 16660200 CAAUCGUGAGGUAAAAGAAGCAGAAAGAAUAUUAACACACACAUAAACAGAUGAUUCAUCUGAAUUUCCACAGAUGUUU ..(((....)))............................................((((((........))))))... ( -9.00, z-score = 0.15, R) >consensus CGACCGCGAGGUAAAAACAUCAUUA_______GUGCGGCCAC__GAACACAUGACUCAUGUGAUUUCC__CAGCUGUUC ..(((....)))...................................((((((...))))))................. ( -9.95 = -9.63 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:04 2011