| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,104,737 – 1,104,834 |
| Length | 97 |
| Max. P | 0.991702 |
| Location | 1,104,737 – 1,104,834 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 66.28 |
| Shannon entropy | 0.56100 |
| G+C content | 0.45192 |
| Mean single sequence MFE | -27.64 |
| Consensus MFE | -14.00 |
| Energy contribution | -14.52 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.991702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1104737 97 + 27905053 AAUCUGCGAUAAAAUCAAAUAG--UCGCAGAUA------GCUAGCUAAGCCGCAUGAAAGGUCGAGAGAUC-UGAAUGGCACAACAAACAUAUGUGUGCGUUCAGA .(((((((((...........)--)))))))).------.....((..(((........)))..))...((-((((((.((((.((......)))))))))))))) ( -30.10, z-score = -3.00, R) >droAna3.scaffold_13340 23287620 95 + 23697760 GAUAUGCGAUAAAGUGCGACGACUUUGUUGAUAUUCCACAUCAGUUAAGCUGCAUGCAAGGUCGAGCGAUAGUGCAUGGGAGAGGGGCUUUGAAA----------- .((((.(((((((((......)))))))))))))(((....(((.....)))((((((..(((....)))..)))))))))..............----------- ( -25.20, z-score = -0.58, R) >droEre2.scaffold_4770 1380223 87 + 17746568 AAUCUGCGAUAG--UCAGAUAG--UCGCAGACA------G----CUAAGCCGCAUGAAAGGUCGCGAGAUC-UGAAUGGCAGCUCAACUGUGUGCUUUCAGA---- .((((((....)--.)))))..--..(((.(((------(----...(((.((.....(((((....))))-).....)).)))...)))).))).......---- ( -29.50, z-score = -1.29, R) >droSec1.super_6 1225969 83 + 4358794 AAUCUGCGAUAAAAUCAGAUAG--UCGCAGAUA------GCUGGCUAAGCCGCAUGAAAGGUCGAGAGAUC-UGAAUGGCAAUACAUACGAA-------------- .(((((((((...........)--)))))))).------((.(((...))).(((...(((((....))))-)..)))))............-------------- ( -25.50, z-score = -2.79, R) >droSim1.chr3R 1128401 83 + 27517382 AAUCUGCGAUAAAAUCAGAUAG--UCGCAGAUA------GCUGGCUAAGCCGCCUGAAAGGUCGAGAGAUC-UGAAUGGCAAUACAUACGAA-------------- .(((((((((...........)--)))))))).------...(((...)))(((....(((((....))))-)....)))............-------------- ( -27.90, z-score = -3.40, R) >consensus AAUCUGCGAUAAAAUCAGAUAG__UCGCAGAUA______GCUAGCUAAGCCGCAUGAAAGGUCGAGAGAUC_UGAAUGGCAAAACAAACGUA______________ .((((((((...............))))))))................((((.......((((....)))).....)))).......................... (-14.00 = -14.52 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:03 2011