| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,343,158 – 6,343,209 |
| Length | 51 |
| Max. P | 0.858542 |
| Location | 6,343,158 – 6,343,209 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 64.73 |
| Shannon entropy | 0.58606 |
| G+C content | 0.42358 |
| Mean single sequence MFE | -5.77 |
| Consensus MFE | -4.16 |
| Energy contribution | -3.94 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.58 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6343158 51 + 23011544 CUUAUCAAAACAUUGUGCCACUGAUAAGUGAUUUUUAUUC-CACGCCCAAUC---------- ...........((((.((....((((((.....)))))).-...)).)))).---------- ( -4.60, z-score = -0.44, R) >droSim1.chr2L 6149900 51 + 22036055 CUUAUCAAAACACUGUUCCACUGAUAAGUGAUAUAUAUUC-CACGCCCAAUC---------- (((((((..............)))))))............-...........---------- ( -4.14, z-score = -0.68, R) >droSec1.super_5 4413977 50 + 5866729 CUUAUCAAAUCACUGUGCCACUGAUAAGUGAUAUUUAUUC-C-CUCCCAAUC---------- ........((((((............))))))........-.-.........---------- ( -5.10, z-score = -1.16, R) >droEre2.scaffold_4929 15271653 50 + 26641161 CUUAUCAUAACACUGUGCCACUGAUAAGUGAUGUUUAUUC-C-CCCCUAAUC---------- (((((((..............)))))))............-.-.........---------- ( -3.94, z-score = -0.24, R) >dp4.chr4_group5 359694 61 - 2436548 CUUAUCG-AACACUGCCCUAUUGAUAAGGAGGCACCACCAACAGCUCCUAUAGCCCCCAACU .((((((-(...........)))))))((.(((...................))).)).... ( -8.41, z-score = -0.47, R) >droPer1.super_5 355399 61 - 6813705 CUUAUCG-AACACUGCCCUAUUGAUAAGGAGGCACCACCAACAGCUCCUAUAGCCCCCAACU .((((((-(...........)))))))((.(((...................))).)).... ( -8.41, z-score = -0.47, R) >consensus CUUAUCAAAACACUGUGCCACUGAUAAGUGAUAUUUAUUC_CACCCCCAAUC__________ (((((((..............))))))).................................. ( -4.16 = -3.94 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:04 2011