| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,087,991 – 1,088,043 |
| Length | 52 |
| Max. P | 0.989640 |
| Location | 1,087,991 – 1,088,043 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 95.19 |
| Shannon entropy | 0.07801 |
| G+C content | 0.36058 |
| Mean single sequence MFE | -9.92 |
| Consensus MFE | -10.11 |
| Energy contribution | -9.93 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.13 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1087991 52 + 27905053 CACAUAUAGAAAUUUGUUCGUAAUUUUAUCUUUCAGCCAAUCCGGCUGAGUC ........((((((.......))))))....(((((((.....))))))).. ( -10.60, z-score = -2.65, R) >droSim1.chr3R 1112088 52 + 27517382 CACAUAUAGAAAUUUGUUCGUAAUUUUAGCUUUCAGCCAAUCCGGCUGAGUC ........((((((.......))))))....(((((((.....))))))).. ( -10.60, z-score = -2.17, R) >droSec1.super_6 1209394 52 + 4358794 CACAUAUAGAAAUUUGUUCGUAAUUUUAGCUUUCAGCCAAUCCGGCUGAGUC ........((((((.......))))))....(((((((.....))))))).. ( -10.60, z-score = -2.17, R) >droEre2.scaffold_4770 1363643 52 + 17746568 UAAAUAUAGAAAUUUUUUCGUAAUUUUAGCUUUCAGUCAAUCCGGCUGAGUC ........((((((.......))))))....(((((((.....))))))).. ( -7.90, z-score = -1.53, R) >consensus CACAUAUAGAAAUUUGUUCGUAAUUUUAGCUUUCAGCCAAUCCGGCUGAGUC ........((((((.......))))))....(((((((.....))))))).. (-10.11 = -9.93 + -0.19)
| Location | 1,087,991 – 1,088,043 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 95.19 |
| Shannon entropy | 0.07801 |
| G+C content | 0.36058 |
| Mean single sequence MFE | -7.42 |
| Consensus MFE | -7.28 |
| Energy contribution | -7.52 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1087991 52 - 27905053 GACUCAGCCGGAUUGGCUGAAAGAUAAAAUUACGAACAAAUUUCUAUAUGUG ...((((((.....))))))................................ ( -9.20, z-score = -1.82, R) >droSim1.chr3R 1112088 52 - 27517382 GACUCAGCCGGAUUGGCUGAAAGCUAAAAUUACGAACAAAUUUCUAUAUGUG ...((((((.....))))))................................ ( -9.20, z-score = -1.57, R) >droSec1.super_6 1209394 52 - 4358794 GACUCAGCCGGAUUGGCUGAAAGCUAAAAUUACGAACAAAUUUCUAUAUGUG ...((((((.....))))))................................ ( -9.20, z-score = -1.57, R) >droEre2.scaffold_4770 1363643 52 - 17746568 GACUCAGCCGGAUUGACUGAAAGCUAAAAUUACGAAAAAAUUUCUAUAUUUA ...((((.(.....).))))................................ ( -2.10, z-score = 0.96, R) >consensus GACUCAGCCGGAUUGGCUGAAAGCUAAAAUUACGAACAAAUUUCUAUAUGUG ...((((((.....))))))................................ ( -7.28 = -7.52 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:51:02 2011