| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,076,257 – 1,076,329 |
| Length | 72 |
| Max. P | 0.930932 |
| Location | 1,076,257 – 1,076,329 |
|---|---|
| Length | 72 |
| Sequences | 3 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 87.96 |
| Shannon entropy | 0.16580 |
| G+C content | 0.42130 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -16.65 |
| Energy contribution | -16.21 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.930932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1076257 72 + 27905053 UAGGAGGUGGUGCUUGAUGGAGAGAUGAAUCCCAUUUCUUUUCGUUAGCUUCAUAACUACCUAUUGAGUUAC ....((((((((((.((((((((((...........)))))))))))))......))))))).......... ( -19.10, z-score = -1.66, R) >droSim1.chr3R 1102629 72 + 27517382 UUGGGGCUGUCGCUUGUUAGAGGGAUGAAUCCUAUUUCCUUUCGUUAGCCUCAUAACUCUCUAUUGAGUUAC .((((((((.((...(..((.((((....)))).))..)...)).))))))))((((((......)))))). ( -23.00, z-score = -2.97, R) >droSec1.super_6 1200065 72 + 4358794 UUGGGGCUGUCGCUUGUUAGAGGGAUGAAUCCUAUUUCCUUUCGUUAGCCUCAUAACUCUCUAUUGAGUUAC .((((((((.((...(..((.((((....)))).))..)...)).))))))))((((((......)))))). ( -23.00, z-score = -2.97, R) >consensus UUGGGGCUGUCGCUUGUUAGAGGGAUGAAUCCUAUUUCCUUUCGUUAGCCUCAUAACUCUCUAUUGAGUUAC ..(((((((.((.......((((((...........)))))))).))))))).((((((......)))))). (-16.65 = -16.21 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:58 2011