| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,064,195 – 1,064,315 |
| Length | 120 |
| Max. P | 0.717961 |
| Location | 1,064,195 – 1,064,315 |
|---|---|
| Length | 120 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.08 |
| Shannon entropy | 0.42928 |
| G+C content | 0.55641 |
| Mean single sequence MFE | -43.70 |
| Consensus MFE | -25.46 |
| Energy contribution | -24.67 |
| Covariance contribution | -0.79 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1064195 120 - 27905053 GCCUUCAGUGUGACCGGCAACAUCGAAGGCCUGUACGCAGUGAAAACGGGCGAAUUGAAAGAGUUCUCCGAACAGGAGCUGCUGGACUGUGAUACCACGGAUAGUGCCUGCAACGGCGGC (((((((.((((((.(((..........))).)).)))).))))..((((((.........(((.((((.....))))..)))...(((((....)))))....))))))....)))... ( -40.70, z-score = -0.87, R) >droSim1.chr3R 1090667 120 - 27517382 GCCUUCAGUGUGACGGGCAACAUCGAAGGCCUGUACGCCGUGAAAACGGGCGAAUUGAAAGAGUUCUCCGAGCAGGAGCUGCUCGACUGUGAUACCACGGAUAGUGCCUGCAACGGCGGC ((((((.((((........)))).)))))).....((((((.....((((((((((.....)))))..(((((((...))))))).(((((....))))).....)))))..)))))).. ( -49.80, z-score = -2.80, R) >droSec1.super_6 1188244 120 - 4358794 GCCUUCAGUGUGACGGGCAACAUCGAAGGCCUGUACGCCGUGAAAACGGGCGAAUUGAAAGAGUUCUCCGAGCAGGAGCUGCUCGACUGUGAUACCACGGAUAGUGCCUGUAACGGCGGC ((((((.((((........)))).)))))).....((((((....(((((((((((.....)))))..(((((((...))))))).(((((....))))).....)))))).)))))).. ( -51.70, z-score = -3.62, R) >droYak2.chr3R 1425738 120 - 28832112 GCGUUUAGUGUGACGGGAAACAUUGAAGGUCUGCACGCCGUGAAAACAGGCGAUUUAAAAGAGUUCUCCGAGCAGGAGCUGCUUGACUGUGAUACCACUGAUAGUGCCUGCAACGGCGGC ((.((((((((........)))))))).))..((.((((((.....(((((.........((((.((((.....))))..)))).(((((.(......).))))))))))..)))))))) ( -41.00, z-score = -1.67, R) >droEre2.scaffold_4770 1341043 120 - 17746568 GCCUUUAGUGUGACGGGCAACAUCGAAGGCCUGUACGCCGUGAAAACAGGCGAAUUGAAAGAGUUCUCCGAGCAGGAGCUGCUCGACUGUGAUACCACGGAUAGUGCCUGCAACGGCGGC (((((..((((........))))..))))).....((((((.....((((((((((.....)))))..(((((((...))))))).(((((....))))).....)))))..)))))).. ( -49.70, z-score = -3.35, R) >droAna3.scaffold_13340 23251583 120 - 23697760 GCCUUCAGUGUGACGGGCAACAUUGAGGGCCUGUACGCCCUGAAGUACGGCGAGCUGAAGGAGUUCUCCGAGCAGGAGCUCCUCGACUGUGAUACCACGGACAGUGCCUGCAACGGCGGC (((((((((((........)))))))))))......((((((..(((.(((..((((.(((((((((.......)))))))))...(((((....))))).))))))))))..))).))) ( -52.20, z-score = -2.18, R) >dp4.chr2 9070145 120 + 30794189 GCCUUCAGUGUGACCGGCAACAUCGAGGGCCUGUAUGCCGUGAAGACGGGCGAGCUAAAGGAGUUCUCCGAGCAGGAGCUCCUCGACUGUGAUACCACAGACAGUGCCUGCAAUGGCGGA ((((((.((((........)))).)))))).....((((((...(.((((((......(((((((((.......)))))))))...(((((....)))))....))))))).)))))).. ( -47.00, z-score = -1.42, R) >droPer1.super_3 2867667 120 + 7375914 GCCUUCAGUGUGACCGGCAACAUCGAGGGCCUGUAUGCCGUGAAGACGGGCGAGCUAAAGGAGUUCUCCGAGCAGGAGCUCCUCGACUGUGAUACCACAGACAGUGCCUGCAAUGGCGGA ((((((.((((........)))).)))))).....((((((...(.((((((......(((((((((.......)))))))))...(((((....)))))....))))))).)))))).. ( -47.00, z-score = -1.42, R) >droWil1.scaffold_181130 3795659 120 + 16660200 GCAUUCAGUACUAUUGGCAAUAUUGAAGGCUUGAAUGCUGUAAAAACCGGUCAAUUAAAGGAAUUCUCAGAACAGGAACUAUUGGAUUGUGAUACCAAAGAUAGUGCCUGCAAUGGUGGU .(((((((((((((((((.........(((......)))..........))).......((...((.(((..(((......)))..))).))..))...))))))).))).))))..... ( -24.01, z-score = 0.69, R) >droVir3.scaffold_12855 2321448 120 + 10161210 GCAUUCAGUGUGACCGGCAACAUUGAGGGUGCUUAUGCCAUCAAAACUGGUGACUUGCAGGAGUUCUCCGAACAGGAACUGCUCGACUGCGAUUCCAAGGAUAGCGCCUGCAAUGGUGGA (((((((((((........)))))))..)))).....((((((.....(....)(((((((.(((.(((.....((((.(((......))).))))..))).))).))))))))))))). ( -44.60, z-score = -2.10, R) >droMoj3.scaffold_6540 11087292 120 + 34148556 GCAUUCAGCGUGACCGGCAACAUCGAAGGCUUGUAUGCCAUUAAAACGGGUGAGCUGCGAGAGUUCUCCGAGCAGGAGCUGCUCGACUGUGACUCCACUGACAGCGCCUGCAAUGGCGGC (((...(((.(((..(....).)))...)))))).(((((((....((((.(((((.....))))))))).(((((.((((.(((...(((....)))))))))).)))))))))))).. ( -42.10, z-score = -0.08, R) >droGri2.scaffold_15074 3335621 120 + 7742996 GCAUUCAGUGUUACAGGCAACAUUGAGGGCUUGUAUGCCAUCAAGACGGGCGAAUUGGAAGAGUUCUCCGAACAGGAGCUGCUCGACUGCGAUUCCACGGACAGUGCCUGCAAUGGUGGC ((.(((((((((......))))))))).))......(((((((...(((((((((((.(.((((.((((.....))))..))))...).)))))).((.....)))))))...))))))) ( -44.60, z-score = -1.95, R) >anoGam1.chr2R 28577496 120 - 62725911 GCGUUCAGUGCGGUCGGCAACGUGGAAGGGUUGCAUCAGAUCAAAACGAAGAAGCUGGAAUCGUACUCGGAGCAGGAGCUGAUCGACUGCGACAAGGUGGACAAUGGAUGCGGCGGUGGC (((((((((((((((((((((.(....).)))))(((((.((....(((.((........))....)))......)).)))))))))))).))..(.....)..)))))))......... ( -33.70, z-score = 0.76, R) >consensus GCCUUCAGUGUGACCGGCAACAUCGAAGGCCUGUAUGCCGUGAAAACGGGCGAAUUGAAAGAGUUCUCCGAGCAGGAGCUGCUCGACUGUGAUACCACGGAUAGUGCCUGCAACGGCGGC ((.(((.((((........)))).))).)).....((((((.....((((((.......((((((((.......)))))).))...(((((....)))))....))))))..)))))).. (-25.46 = -24.67 + -0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:55 2011