| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,054,809 – 1,054,868 |
| Length | 59 |
| Max. P | 0.651192 |
| Location | 1,054,809 – 1,054,868 |
|---|---|
| Length | 59 |
| Sequences | 4 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 87.29 |
| Shannon entropy | 0.20738 |
| G+C content | 0.40116 |
| Mean single sequence MFE | -12.80 |
| Consensus MFE | -9.57 |
| Energy contribution | -9.45 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.651192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1054809 59 - 27905053 AAGAUGUUUGAAAUGGGCAUCAGAGAAGCCUACAGCACCAUUUUUCGAUUUACCAUCUU ((((((.(((((((((((...((......))...)).))))..))))).....)))))) ( -11.20, z-score = -1.19, R) >droSim1.chr3R 1081140 59 - 27517382 AAGGUGUUUGAAAUGGGCAUCAGAGAAGCCUACAGCAACAUUUUUCGAUUUACCAUCUC ..((((.(((((((((((.((...)).)))))..........))))))..))))..... ( -12.10, z-score = -1.06, R) >droSec1.super_6 1178803 59 - 4358794 AAGGUGUUUGAAAUGGGCAUCAGAGAAGCCUACAGCAACAUUUUUCGAUUUACCAUUUC ..((((.(((((((((((.((...)).)))))..........))))))..))))..... ( -12.10, z-score = -1.36, R) >droEre2.scaffold_4770 1330939 55 - 17746568 ---UUGUACGAGGUGGGCAUCAGAGAAGCAUACAGCAACAUUUUU-GAUUUACCACUUC ---......(((((((..((((((((.((.....))....)))))-)))...))))))) ( -15.80, z-score = -3.89, R) >consensus AAGGUGUUUGAAAUGGGCAUCAGAGAAGCCUACAGCAACAUUUUUCGAUUUACCAUCUC .........(((((((..(((.(((((((.....))....))))).)))...))))))) ( -9.57 = -9.45 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:54 2011