| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,037,735 – 1,037,825 |
| Length | 90 |
| Max. P | 0.753767 |
| Location | 1,037,735 – 1,037,825 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 72.81 |
| Shannon entropy | 0.49209 |
| G+C content | 0.44702 |
| Mean single sequence MFE | -22.93 |
| Consensus MFE | -12.14 |
| Energy contribution | -11.58 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753767 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1037735 90 - 27905053 ACGUAAACACACCGGGAAAUACCAUCAGAGUG-----CGCUUGGCAACAAGUUUGGC--ACAGUACUCGGUUUUCGAGAUACUUUUAUUUUGAGGGU ...........((((......)).((((((((-----((((((....)))))...))--))((((((((.....)))).)))).....))))))).. ( -26.80, z-score = -2.84, R) >droAna3.scaffold_13340 23231204 94 - 23697760 ACAUAAACAGAGU-AGGAAUUUCAUCAAAGCAGAUCCCGCUUGGCAACAAGUUCUGC--AUAGUUUAUAGUGAGAGAUAUUGUAGUAUGUUUGGGAU ...((((((.(.(-(.(((((((.(((..(((((....(((((....))))))))))--.((.....)).)))))))).)).)).).)))))).... ( -22.20, z-score = -1.68, R) >droEre2.scaffold_4770 1314552 89 - 17746568 ACGUAAACACGCAGAGGAAUACCAUUAGAAUG-----CGCUUGGCAACAAGUUUGGCAGAGUGUACUCGGUUCCAGAGAUACUU---AUUUGAGGGU .(((....))).........(((.(((((.((-----((((((....)))))...)))((((((.(((.......)))))))))---.))))).))) ( -21.70, z-score = -0.92, R) >droYak2.chr3R 1398341 81 - 28832112 GCGUAAGCAUACCGAGAAAUACCAUUAGAAUG-----CGCUUGGCAACAAGCC--------AGUACCCGGUUCAAGGGAUAGUU---AUUUGAGGGU ((....))............(((.(((((.((-----.(((((....))))))--------)...(((.......)))......---.))))).))) ( -22.50, z-score = -1.79, R) >droSec1.super_6 1161012 85 - 4358794 ACGUAAACACACCGGGAAAUACCAUCAGAGUG-----CGCUUGGCAACAAGUUUGGC----AGCUUUCGGUUUCCGAGAUACUU---UUUUGAGGGU ...........((((......)).((((((((-----((((((....)))))...))----)..((((((...)))))).....---)))))))).. ( -21.70, z-score = -0.66, R) >droSim1.chr3R 1063370 84 - 27517382 ACGUAAACACACCGGGAAAUACCAUCAGAGUG-----CGCUUGGCAACAAGUUUGGC----AGUGUUCGGUUUCCGAGAUACUU----UUUGAGGGU ...........((((......)).((((((((-----((((((....)))))...))----)((((((((...)))).)))).)----))))))).. ( -22.70, z-score = -0.84, R) >consensus ACGUAAACACACCGAGAAAUACCAUCAGAGUG_____CGCUUGGCAACAAGUUUGGC____AGUACUCGGUUUCAGAGAUACUU___UUUUGAGGGU ....................(((.(((((.........(((((....))))).............(((.......)))..........))))).))) (-12.14 = -11.58 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:54 2011