| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,031,740 – 1,031,811 |
| Length | 71 |
| Max. P | 0.986518 |
| Location | 1,031,740 – 1,031,811 |
|---|---|
| Length | 71 |
| Sequences | 7 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 66.44 |
| Shannon entropy | 0.63046 |
| G+C content | 0.39127 |
| Mean single sequence MFE | -16.10 |
| Consensus MFE | -7.23 |
| Energy contribution | -7.26 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.78 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.24 |
| SVM RNA-class probability | 0.986518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1031740 71 + 27905053 -CAAUUUUAA--AUAUAGACGAUGUGGGGAAAUUGCUAAUCUGC---AGUUCCCGAAAAAAAGGAAACACACGAAUC -.........--..........(((((((((.((((......))---)))))))........(....).)))).... ( -17.10, z-score = -3.13, R) >droSim1.chr3R 1057147 68 + 27517382 -CAAUUUUAA--AUGGACACGAUGUGGGGAAAUUGCUAAUCUGC---AGUUCCCCCAAA---GGAAACACCCGAAUC -.........--.(((........(((((.((((((......))---)))).)))))..---(....)..))).... ( -20.20, z-score = -2.63, R) >droSec1.super_6 1154807 68 + 4358794 -CAAUUUUAA--AUGGAGACGAUGUGGGGAAAUUGCUAAUCUGC---AGUUCCCCCAAA---GGAAACACCCGAAUC -.........--.(((........(((((.((((((......))---)))).)))))..---(....)..))).... ( -20.20, z-score = -2.58, R) >droYak2.chrU 20219395 67 + 28119190 -CAAUUUUUA--AUACUCACGAUGUGGGGAAAUUGCUAAUCUGC---AGUUCCCCAAGC----AAAACUUCCGAAAC -.........--........(...(((((((.((((......))---)))))))))..)----.............. ( -16.80, z-score = -2.95, R) >droEre2.scaffold_4770 1308289 66 + 17746568 -CAAUUUUAA---UAAAGACUAUGUGGGGAAAUUGCUAAUCUGU---AGUUCCCCAAC----GGAAACACCCGAAAC -.........---...........(((((((.((((......))---))))))))).(----((......))).... ( -17.50, z-score = -2.90, R) >droAna3.scaffold_13340 23225928 73 + 23697760 -CAUUUUUAAAUAUAUACUCCAAAAGGGGAAAUUACUAAUCUGACGGAGUUCCUUUACC---GGAAGCCCAUGAACC -................((((....))))................((..((((......---))))..))....... ( -11.20, z-score = 0.26, R) >triCas2.ChLG3 15578027 71 - 32080666 UUGUUUCUGU---GCUUGUCUGCUUAUCAAAAUUAUAAUUCCGU---GGUUUCUGAGAAAAAGGGAAUAAGUUUAUU ((((((((..---((......))...((((((((((......))---))))).)))......))))))))....... ( -9.70, z-score = -0.13, R) >consensus _CAAUUUUAA__AUAUAGACGAUGUGGGGAAAUUGCUAAUCUGC___AGUUCCCCAAAA___GGAAACACCCGAAUC ........................(((((((...((......)).....)))))))..................... ( -7.23 = -7.26 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:53 2011