| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,338,685 – 6,338,804 |
| Length | 119 |
| Max. P | 0.523819 |
| Location | 6,338,685 – 6,338,804 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.77 |
| Shannon entropy | 0.36636 |
| G+C content | 0.49189 |
| Mean single sequence MFE | -38.30 |
| Consensus MFE | -22.51 |
| Energy contribution | -23.21 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6338685 119 - 23011544 UGGAUUUCUCAGUUGCGCGCACUUUCCAGCACUGGAGUUGGAACGGAUAACAGAGCUAUGCCAGCACGCCACCUAUGUGUCCAGUAGCUCUGUUAAGUUUGAUA-UUUUACUGUUCGCUA ..............(((.(((..(((((((......)))))))((((((((((((((((....(((((.......)))))...)))))))))))..)))))...-......))).))).. ( -35.90, z-score = -1.24, R) >droSim1.chr2L 6145341 119 - 22036055 UGGAUUUCUCAGUUGCACGCACUUUCCAGCACUGUAGUUGGAACGGAUAACAGAGCCCUGCCAACACGCCACCUAGGUGUGCAGUAGCUCUGUUAAGUUUGAUA-UUUCACUGUUCGCUA .........((..((((.((........))..))))..))((((((.(((((((((.((((....(((((.....)))))))))..)))))))))....(((..-..))))))))).... ( -36.80, z-score = -1.58, R) >droSec1.super_5 4409434 103 - 5866729 UGGAUUUCUCAUUUGCGC---------------GUAGUUGGAGCGGAUAACAGAGCUUUGCCAACACGCCACCUAGGUGUGCAGUAGCUCUGUUAGCUCUG-UA-UUUCACUGUUCGCUA ..............(((.---------------.((((.((((((((((((((((((((((....(((((.....))))))))).))))))))))..))))-).-.)))))))..))).. ( -37.10, z-score = -2.45, R) >droYak2.chr2L 15758239 120 + 22324452 UGGAAUUCGCAGUGGCGCGCGCUUUUCAGCACUGCAUUUGGAGCGGAUAACAGGGCGCUGCCAACACGCCACCUAUGCGGGCAGCUGCUCUGUUACGCUCGUUACUUUUACUGUUCGCUA ..((((....(((((((((.(((....))).).)).....(((((..(((((((((((((((....(((.......))))))))).))))))))))))))))))))......)))).... ( -46.60, z-score = -1.71, R) >droEre2.scaffold_4929 15267172 118 - 26641161 UGGAUUUCUUAGUUGCGCGCACUUUACAGCACUGGAUUUUAAGCGGAUAACAGGGCUCUGCCAAUACGCCACCUAUACGUGCAGUAGCUCUGUUA-GCUCG-UAUUUUUACUGAGCGCUU ..((..(((.(((.((............))))))))..))((((...((((((((((((((....(((.........))))))).))))))))))-(((((-((....))).)))))))) ( -35.10, z-score = -1.07, R) >consensus UGGAUUUCUCAGUUGCGCGCACUUUCCAGCACUGGAGUUGGAGCGGAUAACAGAGCUCUGCCAACACGCCACCUAUGUGUGCAGUAGCUCUGUUAAGUUUG_UA_UUUUACUGUUCGCUA ..............((..((........))..........((((((.((((((((((((((....((((.......)))))))).))))))))))...............)))))))).. (-22.51 = -23.21 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:04 2011