| Sequence ID | dm3.chr3R |
|---|---|
| Location | 1,006,377 – 1,006,497 |
| Length | 120 |
| Max. P | 0.690683 |
| Location | 1,006,377 – 1,006,497 |
|---|---|
| Length | 120 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.73 |
| Shannon entropy | 0.32832 |
| G+C content | 0.57197 |
| Mean single sequence MFE | -45.99 |
| Consensus MFE | -31.23 |
| Energy contribution | -30.54 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 1006377 120 + 27905053 UAAUCGUCUCACCGGCGGUGAGGAGGCCCGCAUGCAAGCAAAAGAUUCACGACGACUGCGAUUGAGACUAUCGUCCGAGAUUGAGUUGUUGUAGUACCGAGCCUGCUGUUGGAACGAGGA ...((((..((.(((((((..((......((......)).........(((((((((.(((((..(((....)))...))))))))))))))....))..))).)))).))..))))... ( -39.60, z-score = -1.16, R) >droSim1.chr3R 1031539 120 + 27517382 UAAACGUCUCACCGGCGGCGAGGAGGCCCGCAUGCAGGCAAAAGAUUCACGACGACUGCGAUUGAGACUGUCGUCCGAGAUUGAGUUGUUGUAGUACCGAGCCUGCUGUUGGAACGAGGA ....(((..((.(((((((..((..(((.(....).))).........(((((((((.(((((..(((....)))...))))))))))))))....))..))).)))).))..))).... ( -43.10, z-score = -1.49, R) >droSec1.super_6 1129436 120 + 4358794 UAAACGUCUCACCGGCGGCGAGGAGGCCCGCAUGCAGGCAAAAGAUUCACGACGACUGCGAUUGAGACUGUCGUCCGAGAUUGAGUUGUUGUAGUACCGAGCCUGCUGUUGGAACGAGGA ....(((..((.(((((((..((..(((.(....).))).........(((((((((.(((((..(((....)))...))))))))))))))....))..))).)))).))..))).... ( -43.10, z-score = -1.49, R) >droYak2.chr3R 1366154 120 + 28832112 UAAACGUCUAACCGGCGGCGAGGAAGAUCGCAUGCAGGCAAAAGAUUCACGACGACUGCGAUUGAGACUAUCGUCCGAGAUUGAGUUGUUGUAGUACCGAGCCUGCUGUUGGAACGAGGA ....(.((...((((((((((......))))..((((((.....(((.(((((((((.(((((..(((....)))...))))))))))))))))).....))))))))))))...)).). ( -42.70, z-score = -2.66, R) >droEre2.scaffold_4770 1281215 120 + 17746568 UAAACGUCUCACCGGCGGCGAGGAAGCCCGCAUGCAGGCAAAGGAUUCACGACGACUGCGAUUGAGACUAUCGUCCGAGAUUGAGUUGUUGUAGUACCGAGCCUGCUGUUGGAACGAGGA ......((((.(((((((((.((...)))))..((((((...(((((.(((((((((.(((((..(((....)))...))))))))))))))))).))..))))))))))))...)))). ( -45.30, z-score = -2.48, R) >droAna3.scaffold_13340 23200784 120 + 23697760 AAGACGCCUCACCGGCGGCGACGAGGCUCGCAUGCAGGCGAAGGACUCGCGGCGACUCCGGUUCAGACUGUCGUCCGAAAUGGAGUUGCUGUAGUAGCGAGCCUGUUGCUGGAACGAGGA ......((((.((((((((....((((((((.(((..((((.....))))((((((((((.(((.(((....))).))).))))))))))...)))))))))))))))))))...)))). ( -61.60, z-score = -3.83, R) >dp4.chr2 9002370 120 - 30794189 CAGUCGGCGCACCGGCGGCGAGGAGGCGCGCAUGCAGGCAAAGGACUCGCGACGACUCCGAUUGAGGCUGUCGUCCGAGAUGGAGUUGCUGUAGUAGCGGGCCUGCUGCUGGUACGAGGA ...((..((.(((((((((....((((.(((.(((.(((((....((((.((((((.((......))..))))))))))......)))))...)))))).))))))))))))).))..)) ( -56.60, z-score = -1.77, R) >droPer1.super_3 2800193 120 - 7375914 CAGUCGGCGCACCGGCGGCGAGGAGGCGCGCAUGCAGGCAAAGGACUCGCGACGACUCCGAUUGAGGCUGUCGUCCGAGAUGGAGUUGCUGUAGUAGCGGGCCUGCUGCUGGUACGAGGA ...((..((.(((((((((....((((.(((.(((.(((((....((((.((((((.((......))..))))))))))......)))))...)))))).))))))))))))).))..)) ( -56.60, z-score = -1.77, R) >droWil1.scaffold_181130 3735873 120 - 16660200 CAGACGUCGCACUGGUGGCGAAGAGGCUCGCAUACAGGCAAAAGAUUCGCGACGACUGCGAUUAAGACUAUCAUCCGAUAUGGAAUUAUUGUAAUAUCGAUUCUGUUGCUGAUACGAUGA ....((((((.(((...((((......))))...))))).....(((.((((((....((((....((.....(((.....)))......))...))))....)))))).)))..)))). ( -30.40, z-score = 0.05, R) >droMoj3.scaffold_6540 11022832 120 - 34148556 CAGCCGACGCACGGGCGGCGACACGGAGCGCAUGCAGGCAAAGGACUCGCGGCGGCUACGAUUCAGACUAUCAUCCGAUAUGGAGUUGUUGUAAAAACGCGCCUGCUGCUGGUACGACGA ....((.((.((.(((((((........)))..((((((...(....)(((...((.(((((((....((((....))))..))))))).)).....))))))))))))).)).)).)). ( -38.60, z-score = 0.86, R) >droGri2.scaffold_15074 3265463 120 - 7742996 CAAUCGCCGGACUGGCGGCGAUGCGGCACGCAUGCAGGCAAAGGACUCGCGACGACUGCGAUUCAGACUAUCAUCUGAGAUGGAGUUGUUGUAAUAACGCGCCUGCUGCUGGUACGAGGA ..(((((((......))))))).((((..(((.((((((...(.....(((((((((.((.((((((......)))))).)).))))))))).....)..)))))))))..)).)).... ( -48.30, z-score = -2.42, R) >consensus CAAACGUCUCACCGGCGGCGAGGAGGCCCGCAUGCAGGCAAAGGAUUCGCGACGACUGCGAUUGAGACUAUCGUCCGAGAUGGAGUUGUUGUAGUACCGAGCCUGCUGCUGGAACGAGGA ...........(((((((((........)))..((((((.....(((.(((((((((.(.(((..((......))...))).))))))))))))).....))))))))))))........ (-31.23 = -30.54 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:49 2011