| Sequence ID | dm3.chr3R |
|---|---|
| Location | 983,550 – 983,671 |
| Length | 121 |
| Max. P | 0.588973 |
| Location | 983,550 – 983,671 |
|---|---|
| Length | 121 |
| Sequences | 6 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 85.52 |
| Shannon entropy | 0.27549 |
| G+C content | 0.51126 |
| Mean single sequence MFE | -41.18 |
| Consensus MFE | -30.41 |
| Energy contribution | -31.25 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 983550 121 + 27905053 -CCGGCCAUGUGA--AGAGUUUCUUUGGGAAUGCGGACGGUGAAACUGUGUGGGGAAUGCAAAUGGUUGUGGCUUGUGAAUUUCCCUCGCAACAAUGAGAAAUGCUUUCCCUCGGCCGGAACCC -((((((....((--((.....))))(((((.(((...........((((.(((((((.((...(((....)))..)).))))))).))))...........))).)))))..))))))..... ( -42.95, z-score = -1.93, R) >droSim1.chr3R 1007175 121 + 27517382 -CCGGCCAUGUGA--AGAGUUUCUUUGGGAAUGCGGACGGUGAAACUGUGUGGGGAAUGCAAAUGGUUGUGGCUUGUGAAUUUCCCUCGCAACAAUGAGAAAUGCUUUCCCGUGGCAGGAACCC -((.((((((.((--((.(((((((..(...(((((((((.....))))..(((((((.((...(((....)))..)).)))))))))))).)...)))))))..)))).)))))).))..... ( -41.50, z-score = -1.65, R) >droSec1.super_6 1107281 121 + 4358794 -CCGGCCAUGUGA--AGAGUUUCUUUGGGAAUGCGGACGGUGAAACUGUGUGGGGAAUGCAAAUGGUUGUGGCUUGUGAAUUUCCCUCGCAACAAUGAGAAAUGCUUUCCCGUGGCCGGAACCC -(((((((((.((--((.(((((((..(...(((((((((.....))))..(((((((.((...(((....)))..)).)))))))))))).)...)))))))..)))).)))))))))..... ( -47.60, z-score = -3.33, R) >droYak2.chr3R 1343260 121 + 28832112 -UCAACCAUGUGA--AGAGUUUCUUUGGGAAUGCGGGCGGUAAAACUGUGUGGGGAAUGCAAAUGGUUGUGGCUUGUGAAUUUCUCUCGCAACAAUGAGCAAUGCUUCCCCGUGGCCGGAACCC -..........((--((.....))))(((..(.(((((((.....))))..((((((.(((..((.(..(...((((((.......))))))..)..).)).)))))))))....))).).))) ( -32.80, z-score = 0.90, R) >droEre2.scaffold_4770 1257352 118 + 17746568 -CCGACCAUGUGA--AGAGUUUCCUUGGGAAUGCGG--GGAAACUCUGUGUGGGGAAUGCAAAUGGUUGUGGCAUGUGAGUUUCUCUCGCAACAAUGAGAAAUGCU-CCCAGUGGCCGGAGCCC -....(((..(..--((((((((((((......)))--))))))))))..)))...........((((.((((.((.((((...(((((......)))))...)))-).))...)))).)))). ( -45.20, z-score = -2.46, R) >droAna3.scaffold_13340 23176455 124 + 23697760 UCGGGCCAUGUGAGAAGAAUCUUUUGGGAAAUGCCAACUGUGCGGUGCAAGGGGAAAUGCAAAUGGCUGCGGCUUGUGAAUUUCUCUCGCAACAAUGAAAAAUGUUUUAACGUGGCCGGAACCU ((.((((((((((((.....((((((.(...((((....).))).).))))))(((((.((...(((....)))..)).)))))))))))((((.(....).)))).....)))))).)).... ( -37.00, z-score = -0.83, R) >consensus _CCGGCCAUGUGA__AGAGUUUCUUUGGGAAUGCGGACGGUGAAACUGUGUGGGGAAUGCAAAUGGUUGUGGCUUGUGAAUUUCCCUCGCAACAAUGAGAAAUGCUUUCCCGUGGCCGGAACCC .(((((((((.....((.(((((((..(...(((((((((.....))))..(((((((.((...(((....)))..)).)))))))))))).)...))))))).))....)))))))))..... (-30.41 = -31.25 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:48 2011