| Sequence ID | dm3.chr3R |
|---|---|
| Location | 943,063 – 943,121 |
| Length | 58 |
| Max. P | 0.933708 |
| Location | 943,063 – 943,121 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 64.77 |
| Shannon entropy | 0.57925 |
| G+C content | 0.53259 |
| Mean single sequence MFE | -19.16 |
| Consensus MFE | -8.18 |
| Energy contribution | -9.46 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 943063 58 + 27905053 AACUCCCGCUCAGAUGGAUGAGC-UGGGUGCAAC-----GUGCGGAU-AAAAUCUGCACAGAGAG ..(.((((((((......)))))-.))).)....-----((((((((-...))))))))...... ( -22.60, z-score = -3.28, R) >droEre2.scaffold_4770 1217111 61 + 17746568 AACUGCCGCCUAAGCGGCUGGAUGCGGAUGAAAUUGGCCCUGUGGUUAGUCAGCCGCACAG---- ..(.(((((....))))).)..(((((.(((...(((((....))))).))).)))))...---- ( -23.70, z-score = -1.63, R) >droYak2.chr3R 1296419 58 + 28832112 AACUCCCGUAUAAAUGGAUGAGA-UGGUUACGGCUG-UGGUUCAUCA-GUCAUCCGCACAG---- ...............((((((((-(((..((....)-)..).)))).-.))))))......---- ( -11.90, z-score = 0.27, R) >droSec1.super_6 1067780 54 + 4358794 AACUCCGGCUCAGAUGGAUGAGC-UGGGUGCAAC-----GUGCGGAU-GAAAUUUGCACAG---- .((.((((((((......)))))-))))).....-----((((((((-...))))))))..---- ( -22.50, z-score = -3.75, R) >droSim1.chr3R 966078 54 + 27517382 AACUCCCGCUCAGAUGGAUAAGC-UGGGUGCAAC-----GUGCGGAU-GAAAUUUGCACAG---- ......(((((((.........)-))))))....-----((((((((-...))))))))..---- ( -15.10, z-score = -1.04, R) >consensus AACUCCCGCUCAGAUGGAUGAGC_UGGGUGCAAC_____GUGCGGAU_GAAAUCUGCACAG____ ....((((((((......)))))..)))...........((((((((....))))))))...... ( -8.18 = -9.46 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:43 2011