| Sequence ID | dm3.chr3R |
|---|---|
| Location | 940,841 – 940,935 |
| Length | 94 |
| Max. P | 0.559118 |
| Location | 940,841 – 940,935 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 65.93 |
| Shannon entropy | 0.52805 |
| G+C content | 0.35111 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -11.91 |
| Energy contribution | -12.35 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 940841 94 + 27905053 CGCUGAAGUUAGAGAUGGCAAAUAAGUCAUCA----UUCAUC----------------AUCA---UUCGAU--AGAUUGGAUCCAAAGAUCUGA-CAGAUAUUAUAGUGCAAUCUGACAU .......((((((((((((......)))))).----...(((----------------(((.---...)))--...(..((((....))))..)-..)))............)))))).. ( -20.80, z-score = -0.64, R) >droEre2.scaffold_4770 1214844 117 + 17746568 CUUUCAAGUUGGAGGUGACAAGUCCUUCAUUAGGUAUACGCCUACCCUUCAUUUGACUGCCAACGUUUUAUUAAAAUCGAAUUAGAAAAUCUGAUCAGACUAAACGAUACAGUCGAA--- .........((((((........)))))).(((((....))))).......((((((((....(((((........((..(((((.....)))))..))..)))))...))))))))--- ( -24.10, z-score = -1.06, R) >droSec1.super_6 1065556 105 + 4358794 CGAUCAAGUUAGAGAUGGCAAAUAAGUCAUUA----UUAGUCUAAUACUCAUUUGACUACCA---AUCGAU--AGAUCUGAUCGAAAGAUCUGA-CAGAUAUUAUGAU---AUCUGAC-- .((((........((((((......)))))).----.(((((.(((....))).)))))...---......--.)))).((((....))))...-(((((((....))---)))))..-- ( -26.90, z-score = -2.18, R) >droSim1.chr3R 963815 105 + 27517382 CGAUCAAGUUAGAGAUGGCAAAUAAGUCAUUA----UUAGUCUAAUACUCAUUUGACUACCA---AUCGAU--AGAUCUGAUCCAAAGAUGUGA-CAGAUAUUAUGAU---AUCUGAC-- .(((((..((...((((((......)))))).----.(((((.(((....))).)))))...---......--.))..)))))...........-(((((((....))---)))))..-- ( -21.60, z-score = -0.70, R) >consensus CGAUCAAGUUAGAGAUGGCAAAUAAGUCAUUA____UUAGUCUAAUACUCAUUUGACUACCA___AUCGAU__AGAUCGGAUCCAAAGAUCUGA_CAGAUAUUAUGAU___AUCUGAC__ .......((((((((((((......)))))).............................................(((((((....)))))))..................)))))).. (-11.91 = -12.35 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:42 2011