| Sequence ID | dm3.chr3R |
|---|---|
| Location | 938,695 – 938,792 |
| Length | 97 |
| Max. P | 0.654689 |
| Location | 938,695 – 938,792 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 81.76 |
| Shannon entropy | 0.37048 |
| G+C content | 0.47336 |
| Mean single sequence MFE | -22.00 |
| Consensus MFE | -15.47 |
| Energy contribution | -15.33 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654689 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 938695 97 - 27905053 AUGGCGACUA--------CAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCAUUUCAAUGACACACAAACCA-ACAACAACGACCGCCUCU--- ..((((....--------....(((((.(((....))))))))...((((((((....)))))))).....................-...........))))...--- ( -22.50, z-score = -1.55, R) >droSim1.chr3R 961706 91 - 27517382 ------ACUA--------CAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCAUUUCAAUGACACACAAACCA-ACAACGACGACCGCCUCU--- ------....--------....(((((.(((....))))))))..((((((((((..((..(((((((....))))..........)-))..)).))).)))))))--- ( -21.50, z-score = -2.33, R) >droSec1.super_6 1063458 97 - 4358794 AUGGCGACUA--------CAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCAUUUCAAUGACACACAAACCA-ACAACGACGACCGCCUCU--- .(((((((((--------(....)))))...........))).))((((((((((..((..(((((((....))))..........)-))..)).))).)))))))--- ( -22.70, z-score = -1.16, R) >droYak2.chr3R 1291322 91 - 28832112 ------ACUA--------CAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCAUUUCAAUGACACACAAACCG-ACAACGACGACCGCCUCU--- ------....--------....(((((.(((....))))))))..((((((((((....(.((.((((....)))).)).)....))-))...(.....)))))))--- ( -22.10, z-score = -2.00, R) >droEre2.scaffold_4770 1212450 91 - 17746568 ------ACUA--------CAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCUGGCGUUUCAUUUCAAUGACACACAAACCA-GCAACGACGACCGCCUCU--- ------....--------....(((((.(((....))))))))..(((((((((((((((.((.((((....)))).)).....)))-)....).))).)))))))--- ( -23.70, z-score = -2.61, R) >droAna3.scaffold_13340 23136696 102 - 23697760 AUGGCGACUACAUACAUUCAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCAUUUCAAUGACACACAGGCCA-ACAACUGGUGCUUCU------ ..(((((((((.(((........))))))...........(((.....))))))))).(((((.((((....)))).))....((((-.....)))))))...------ ( -23.50, z-score = -0.56, R) >dp4.chr2 8919076 96 + 30794189 ------ACUGC-----UGCAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCAUUUCAAUGACACACAAACCG-UCGACAACAAGACCAGCCCU- ------...((-----(((((.(((((.(((....))))))))...((((((((....))))))))......)))...........(-((........)))))))...- ( -22.60, z-score = -1.13, R) >droPer1.super_3 2719418 96 + 7375914 ------ACUGC-----UGCAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCAUUUCAAUGACACACAAACCG-UCGACAACAAGACCAGCCCU- ------...((-----(((((.(((((.(((....))))))))...((((((((....))))))))......)))...........(-((........)))))))...- ( -22.60, z-score = -1.13, R) >droWil1.scaffold_181130 3658352 105 + 16660200 -CUACAUCUAU--CCAUAUAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCAUUUCAAUGACACACAAACCACACGACGGCAAC-GCUGCUGAU -..........--..........(((((..................((((((((....)))))))).......((.....)).)))))....(((((..-..))))).. ( -22.00, z-score = -0.82, R) >droVir3.scaffold_12855 2207752 96 + 10161210 ------AACAU--ACAUCCAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCAUUUCAAUGACACACAAACCA-AUGACGCCAACUGCAGC---- ------.....--.........(((((.(((....)))))))).....((((((((...))((.((((....)))).))........-..)))))).........---- ( -19.90, z-score = -1.02, R) >droMoj3.scaffold_6540 10959424 96 + 34148556 ------AACUU--ACAUCUAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCAUUUCAAUGACACACAAACCA-AUGACGCCAACUGCAGC---- ------.....--...(((...(((((.(((....))))))))..)))((((((((...))((.((((....)))).))........-..)))))).........---- ( -21.40, z-score = -1.54, R) >droGri2.scaffold_15074 3202864 96 + 7742996 ------GACAC--ACAUCCAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCGUUUCAAUGACACACAAACCA-AUGACGCCAACUGCAGC---- ------.....--.........(((((.(((....)))))))).....((((((((...))((.((((....)))).))........-..)))))).........---- ( -19.50, z-score = -0.22, R) >consensus ______ACUA______U_CAUAAGUGGUAAUAAUAAUUCCGCUCAAGAGGCGUCGCCCGGCGUUUCAUUUCAAUGACACACAAACCA_ACAACGACAACCGCAGCU___ ..................(((.(((((.(((....))))))))...((((((((....))))))))......))).................................. (-15.47 = -15.33 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:41 2011