| Sequence ID | dm3.chr3R |
|---|---|
| Location | 933,190 – 933,289 |
| Length | 99 |
| Max. P | 0.646303 |
| Location | 933,190 – 933,289 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 73.98 |
| Shannon entropy | 0.42060 |
| G+C content | 0.31003 |
| Mean single sequence MFE | -18.88 |
| Consensus MFE | -10.82 |
| Energy contribution | -11.82 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 933190 99 + 27905053 GUUUUCGUUGUGUGACUCUAUUAAUGUAUUUACGCAGUGUUCUGUUUUUAGGGUCAUAUUUUAAUGAUCAUUUUUGCCUGACGUUGUAAUUACCAAUGA ....((((((((((((((((.....((....))((((....))))...))))))))))...(((((.(((........)))))))).......)))))) ( -20.20, z-score = -1.65, R) >droSim1.chr3R 956152 97 + 27517382 GUUUUCGUUGUGUGACUCUAUUAAUGAAUUCACGCAGUGUUCUGUUUUUAGAGUCAUACUUUAAUAGUCAAUU--GCCUGAUGUUGUAAUUAACGAAGU ..((((((((((((((((((..(((((((.(.....).)))).)))..)))))))))))..........((((--((........))))))))))))). ( -26.60, z-score = -3.65, R) >droSec1.super_6 1057871 97 + 4358794 GUUUUCGUUCUGUAACUUUGUUAAUGUAUUUACGAAGUGUUCUGUUUUUAAAGUUAUACUUUAAUAGUCAAUU--GCCUGAUGUUGUAAUUAACGAAGU ..............(((((((((((.(((..(((((((((.((........))..)))))))....((((...--...)))))).)))))))))))))) ( -17.30, z-score = -1.71, R) >droEre2.scaffold_4770 1207248 81 + 17746568 UUUUUCGUUGUGAGACUCUUUUAACGAG---------------GUUUUUGGAGUAAUACUUUAAUAGAAAUUU---GUUCACGGUGUAAUUGACAAAGU ..((((((((.(((...))).)))))))---------------).(((((.(((.(((((..(((((....))---)))...))))).)))..))))). ( -11.40, z-score = 0.85, R) >consensus GUUUUCGUUGUGUGACUCUAUUAAUGAAUUUACGCAGUGUUCUGUUUUUAGAGUCAUACUUUAAUAGUCAAUU__GCCUGACGUUGUAAUUAACAAAGU ..((((((((((((((((((..(((..................)))..))))))))))).......((((........)))).........))))))). (-10.82 = -11.82 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:40 2011