| Sequence ID | dm3.chr3R |
|---|---|
| Location | 921,933 – 921,983 |
| Length | 50 |
| Max. P | 0.964980 |
| Location | 921,933 – 921,983 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 97.60 |
| Shannon entropy | 0.03884 |
| G+C content | 0.34000 |
| Mean single sequence MFE | -9.00 |
| Consensus MFE | -9.00 |
| Energy contribution | -9.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.87 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 921933 50 - 27905053 UUCGAUUUCUGCUUUUUAUGCUGAAAAAGCGUAAUUAAUGCGUUUUUCCC ...((....(((...(((((((.....))))))).....)))....)).. ( -9.00, z-score = -1.86, R) >droSim1.chr3R 944769 50 - 27517382 UUCGAUUUCUGCUUUUUAUGCUGAAAAAGCGUAAUUAAUGCGUUUUUCCC ...((....(((...(((((((.....))))))).....)))....)).. ( -9.00, z-score = -1.86, R) >droAna3.scaffold_13340 23120667 50 - 23697760 UUCGAUUUCUGCUUUUUAUGCUGAAAAAGCGUAAUUAAUGCGUUUUUCCC ...((....(((...(((((((.....))))))).....)))....)).. ( -9.00, z-score = -1.86, R) >dp4.chr2 8899638 50 + 30794189 UUCGAUUCCUGCUUUUUAUGCUGAAAAAGCGUAAUUAAUGCGUUUUUCCU ...((....(((...(((((((.....))))))).....)))....)).. ( -9.00, z-score = -1.88, R) >droPer1.super_3 2699991 50 + 7375914 UUCGAUUCCUGCUUUUUAUGCUGAAAAAGCGUAAUUAAUGCGUUUUUCCU ...((....(((...(((((((.....))))))).....)))....)).. ( -9.00, z-score = -1.88, R) >consensus UUCGAUUUCUGCUUUUUAUGCUGAAAAAGCGUAAUUAAUGCGUUUUUCCC ...((....(((...(((((((.....))))))).....)))....)).. ( -9.00 = -9.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:39 2011