| Sequence ID | dm3.chr3R |
|---|---|
| Location | 920,006 – 920,059 |
| Length | 53 |
| Max. P | 0.586675 |
| Location | 920,006 – 920,059 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 92.45 |
| Shannon entropy | 0.13199 |
| G+C content | 0.50007 |
| Mean single sequence MFE | -16.44 |
| Consensus MFE | -13.72 |
| Energy contribution | -13.36 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 920006 53 - 27905053 AACGAGCGCACCAUCUGCAGAGAGCGUUUUGUACGUUUGCAUUGGAGGUUCAC ...((((.(.(((..(((((...((((.....))))))))).))).))))).. ( -15.10, z-score = -1.29, R) >droEre2.scaffold_4770 1193611 53 - 17746568 AACGAGCGCACCAUCUGCAAAGAGCAUUUCGUACGUUUGCAUUGGAGGUGCAU .....((((.(((..(((((((.((.....)).).)))))).)))..)))).. ( -15.30, z-score = -1.26, R) >droYak2.chr3R 1265472 53 - 28832112 AACGAGCGCACCAUCUGUAAAGAACAUUUUGUACGUUUGCAUUGGUGGUGCAC .......(((((((((((((((.((.....)).).))))))..)))))))).. ( -17.70, z-score = -2.42, R) >droSec1.super_6 1044654 52 - 4358794 AACGAG-GCACCAUCUGCAGAGAGCGUUUUGUACGUUUGCAUUGGAGGUGCAC ......-(((((.(((.....((((((.....)))))).....)))))))).. ( -16.90, z-score = -1.97, R) >droSim1.chr3R 942833 53 - 27517382 AACGAGCGCACCAUCUGCAGAGAGCGUUUUGUACGUUUGCAUUGGAGGUGCAC .......(((((.(((.....((((((.....)))))).....)))))))).. ( -17.20, z-score = -1.58, R) >consensus AACGAGCGCACCAUCUGCAGAGAGCGUUUUGUACGUUUGCAUUGGAGGUGCAC .......(((((.(((((((((.((.....)).).))))))..)).))))).. (-13.72 = -13.36 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:39 2011