| Sequence ID | dm3.chr3R |
|---|---|
| Location | 907,710 – 907,781 |
| Length | 71 |
| Max. P | 0.856157 |
| Location | 907,710 – 907,781 |
|---|---|
| Length | 71 |
| Sequences | 8 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 67.60 |
| Shannon entropy | 0.68284 |
| G+C content | 0.39076 |
| Mean single sequence MFE | -16.22 |
| Consensus MFE | -4.58 |
| Energy contribution | -5.81 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.856157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 907710 71 + 27905053 CGAUCUCCAGUAUAUUUUAAUUACACUUGUGUGAA--UGCCGCCGGCGGCAAUUGAAAUAUUUUUCCGUCUCU .(((.......(((((((((((.(((....)))..--.((((....)))))))))))))))......)))... ( -17.62, z-score = -2.48, R) >droSim1.chr3R 929893 71 + 27517382 GGAUCUCUAGUAUAUUUUAAUUACACUUGUGUGAA--UGCCGCCGGCAGCAAUUGAAAUAUUUUUCCGUCUCU (((........(((((((((((.(((....)))..--((((...))))..)))))))))))...)))...... ( -14.70, z-score = -1.55, R) >droSec1.super_6 1031251 71 + 4358794 GGAUCUCUAGUAUAUUUUAAUUACACUUGUGUGAA--UGCCGCCGGCGGCAAUUGAAAUAUUUUUCCGUCUCU (((........(((((((((((.(((....)))..--.((((....)))))))))))))))...)))...... ( -18.60, z-score = -2.70, R) >droYak2.chr3R 1245487 70 + 28832112 CGGUCUCUAAUAUAUUUUAAUUACACUUGUGUGAA--UGCCGCCGGUGGCAAUUAAAAUAUUUU-CCGUCUCU (((........(((((((((((.(((....)))..--.((((....)))))))))))))))...-)))..... ( -16.20, z-score = -2.83, R) >droEre2.scaffold_4770 1180820 71 + 17746568 CGAUCUCUAGUAUAUUUUAAUUACACUUGUGUGAA--UACCGCCGACGGCAAUUGAAAUAUUUUUCCGUCUCU .(((.......(((((((((((.(((....)))..--....(((...))))))))))))))......)))... ( -13.02, z-score = -1.67, R) >droAna3.scaffold_13340 23106954 71 + 23697760 CGAUCUGUAGUAUAUUUUAAUUACACUUGUGUGAA--CGCCGCCGGCGGCAAUUGAAAUAUUUUUCCAUCCGU .(((.......(((((((((((.(((....)))..--.((((....)))))))))))))))......)))... ( -17.22, z-score = -1.72, R) >droWil1.scaffold_181130 3626297 64 - 16660200 -----CUGUCUUUGCUUAACUUGGUCUGGUUUGAA----UUUAGGGCAGAGACAGAGAGACCUCCUCUUUUAU -----((((((((((((.......((......)).----....))))))))))))((((.....))))..... ( -19.50, z-score = -1.68, R) >droGri2.scaffold_15074 3169284 56 - 7742996 -----------------CGAUUGCAGUGAAUUUAAAUUACUGCCAAUUGCAAUUGCAAUCUAUUGUUGCCCAC -----------------((((((((((((.......)))))).)))))).....(((((.....))))).... ( -12.90, z-score = -2.23, R) >consensus CGAUCUCUAGUAUAUUUUAAUUACACUUGUGUGAA__UGCCGCCGGCGGCAAUUGAAAUAUUUUUCCGUCUCU ...........(((((((((((.(((....)))........((.....)))))))))))))............ ( -4.58 = -5.81 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:38 2011