| Sequence ID | dm3.chr3R |
|---|---|
| Location | 885,549 – 885,658 |
| Length | 109 |
| Max. P | 0.939000 |
| Location | 885,549 – 885,658 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.77 |
| Shannon entropy | 0.36178 |
| G+C content | 0.50940 |
| Mean single sequence MFE | -34.56 |
| Consensus MFE | -20.81 |
| Energy contribution | -21.29 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.939000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 885549 109 - 27905053 UGAAGGCGGCCGAAGGUUGUCGACUGUCCGACUGCUCGCUCGGCUGCUAUCAAUGAGUGCGCUGUCAAAAUCAAAAUGCUGUGCAUUUAU---GGGUACAAAUCCACGAAAU (((.(((((((((.(((.((((......)))).)).)..))))))))).)))((((((((((.((............)).))))))))))---((((....))))....... ( -39.70, z-score = -3.11, R) >droSim1.chr3R 912951 94 - 27517382 UGAAGGCGGCCGAAGGUUGUCGACU------------GCUCGGCUGCUGUCAAUGGGUGCUAUGCC---AUCGAAAUGCCUUGCAUUUCU---GGGUACAAAUCCACGAAAU (((.(((((((((.((((...))))------------..))))))))).))).(((((....((((---...(((((((...))))))).---.))))...)))))...... ( -37.20, z-score = -3.11, R) >droSec1.super_6 1014548 94 - 4358794 UGAAGGCGGCCGAAGGUUGUCGACU------------GCUCGGCUGCUGGCAAUGAGUGCUGUGCC---AUCGAAAUGCCUUGCAUUUAU---GGGUACAAAUCCACGAAAU ((..(((((((((.((((...))))------------..)))))))))..))....(((.((((((---....((((((...))))))..---.))))))....)))..... ( -35.30, z-score = -2.31, R) >droYak2.chr3R 1229092 90 - 28832112 UGAAGGCGGCCGAAGGU-------U------------GUUCGGCUGCUGUCAAUGAUUGCUGUGGU---AACGAAAUGCAGUGUAUUUUUAUGGGGCAGAAGUCCACGAAAU (((.((((((((((...-------.------------.)))))))))).)))........(((((.---.((....(((..((((....))))..)))...))))))).... ( -29.30, z-score = -2.14, R) >droEre2.scaffold_4770 1164376 96 - 17746568 UGAAGGCGGCCGAAGGUUGCCGACU------------GCUCGGCAGCUGACAAUGAUUGCUGUGGU---AACGAAACGCUGUGC-UUUUUAUGGGGCACAUGUCCACGAAAU ....((((..((..(((((((((..------------..))))))))).....))..))))((((.---......(((.(((((-(((....)))))))))))))))..... ( -31.31, z-score = -0.87, R) >consensus UGAAGGCGGCCGAAGGUUGUCGACU____________GCUCGGCUGCUGUCAAUGAGUGCUGUGCC___AUCGAAAUGCCGUGCAUUUAU___GGGUACAAAUCCACGAAAU (((.(((((((((..........................))))))))).)))....................(((((((...)))))))....((((....))))....... (-20.81 = -21.29 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:35 2011