Locus 8705

Sequence ID dm3.chr3R
Location 870,056 – 870,142
Length 86
Max. P 0.917400
window11950

overview

Window 0

Location 870,056 – 870,142
Length 86
Sequences 4
Columns 86
Reading direction forward
Mean pairwise identity 91.47
Shannon entropy 0.13646
G+C content 0.31194
Mean single sequence MFE -13.15
Consensus MFE -12.65
Energy contribution -12.40
Covariance contribution -0.25
Combinations/Pair 1.05
Mean z-score -1.57
Structure conservation index 0.96
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.26
SVM RNA-class probability 0.917400
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 870056 86 + 27905053
UGGAUUAAAACCGUUAUUAUUCUUAUUUAAGAAUAAAUACCAUGCAUUCUGCUUAAAUCGGAUUACUUUAAUCAACACCUGGCCCG
..(((((((.(((...((((((((....)))))))).......((.....))......))).....)))))))............. ( -12.20, z-score =  -1.19, R)
>droEre2.scaffold_4770 1155816 85 + 17746568
UGGAUUAAAGCCAUUAUUAUUCUUAUUUAAGAAUAAACACCGUGCACUCUGAUUUAAUCGGAUUAUUUUAAUCAACAACUG-CCUG
..((((((((((....((((((((....)))))))).....).))..((((((...))))))....)))))))........-.... ( -14.20, z-score =  -2.13, R)
>droSec1.super_6 1006194 86 + 4358794
UGGAUUAAAACCGUUAUUAUUCUUAUUUAAGAAUAAAUACCAUGCAUUCCGCUUUAAUCGGAUUACUUUAAUCAAUAACUGGCCUG
..(((((((.......((((((((....))))))))...........((((.......))))....)))))))............. ( -13.10, z-score =  -1.40, R)
>droSim1.chr3R 904295 86 + 27517382
UGGAUUAAAACCGUUAUUAUUCUUAUUUAAGAAUAAAUACCACGCAUUCCGCUUUAAUCGGAUUACUUUAAUCAAUAACUGGCCUG
..(((((((.......((((((((....))))))))...........((((.......))))....)))))))............. ( -13.10, z-score =  -1.56, R)
>consensus
UGGAUUAAAACCGUUAUUAUUCUUAUUUAAGAAUAAAUACCAUGCAUUCCGCUUUAAUCGGAUUACUUUAAUCAACAACUGGCCUG
..(((((((.......((((((((....))))))))...........((((.......))))....)))))))............. (-12.65 = -12.40 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:35 2011