| Sequence ID | dm3.chr3R |
|---|---|
| Location | 855,547 – 855,627 |
| Length | 80 |
| Max. P | 0.538577 |
| Location | 855,547 – 855,627 |
|---|---|
| Length | 80 |
| Sequences | 4 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 76.46 |
| Shannon entropy | 0.37935 |
| G+C content | 0.36563 |
| Mean single sequence MFE | -15.40 |
| Consensus MFE | -10.04 |
| Energy contribution | -11.72 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 855547 80 - 27905053 UUGCCAGACUAUAAGUCUGGCAAUCAUUAACCGAGGUCAAUUCGAUCAGUUAAGCAUUUUCAAGUAUUACGAUCAAAAUG (((((((((.....))))))))).((((....(((.....)))((((.((...((........))...))))))..)))) ( -19.50, z-score = -3.59, R) >droSim1.chr3R 889539 80 - 27517382 UUGCCAGACUAUGAGUCUGGCAAUCAUUAACCGAGGUCAAUUUGAGCACUUAAGCUUUUUAAAGUAUUAUGAUCGGAAUG (((((((((.....))))))))).......(((((.((.....)).)......((((....)))).......)))).... ( -22.60, z-score = -3.06, R) >droYak2.chr3R 1199708 80 - 28832112 UUGUCAGACCUUAAGUCCGGCAAUCCUUUAUCGAAGGAAAUUUUAUCAGAACUUCAAUUUCGGGUAUUAUGAUCAGAAUG (((((.(((.....))).)))))((((((...)))))).(((((((((..((((.......))))....)))).))))). ( -14.30, z-score = -0.20, R) >droEre2.scaffold_4770 1142246 80 - 17746568 UUGUAGCACCUUAAGUCCGGCAAUCAUCUAUCGAAGUCAAUUUCAUCAGCUAACCAAUUUCAAGUAAUAUGAUCAGAAUG ...((((.((........))............((((....))))....))))............................ ( -5.20, z-score = 1.49, R) >consensus UUGCCAGACCAUAAGUCCGGCAAUCAUUAACCGAAGUCAAUUUGAUCAGUUAAGCAAUUUCAAGUAUUAUGAUCAGAAUG (((((((((.....))))))))).................((((((((.....((........))....))))))))... (-10.04 = -11.72 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:34 2011