| Sequence ID | dm3.chr3R |
|---|---|
| Location | 843,327 – 843,393 |
| Length | 66 |
| Max. P | 0.537715 |
| Location | 843,327 – 843,393 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 75.54 |
| Shannon entropy | 0.43441 |
| G+C content | 0.55133 |
| Mean single sequence MFE | -8.94 |
| Consensus MFE | -7.20 |
| Energy contribution | -7.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.58 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 843327 66 - 27905053 ACUUCCUUUUCCUCCUCCACUUGCGAUUCCCCUACGUCCUGGCAGCCAUGUCCUCAUUGAGCUGUU ........................................((((((((((....)).)).)))))) ( -7.20, z-score = 0.05, R) >droSim1.chr3R 878339 66 - 27517382 ACCUCCUUUUCCCCCGCCACUUGCAAUUCCCCUACGUCCUGGCAGCCAUGUCCUCAUUGAGCUGUU ...............((.....))................((((((((((....)).)).)))))) ( -7.80, z-score = -0.31, R) >droSec1.super_6 980219 66 - 4358794 ACCUCCUUUUCCCCCGCCACUGGCAAUUCCCCUACGUCCUGGCAGCCAUGUCCUCAUUGAGCUGUU ...............(((...)))................((((((((((....)).)).)))))) ( -10.20, z-score = -0.22, R) >droYak2.chr3R 1184832 60 - 28832112 ------ACUUCCAGCUCCACUUCGACUCCCCUUUCGUCCUGGCAGCCAUGUCCUCAUUGAGCUGUU ------.....((((((......(((.........)))..((((....))))......)))))).. ( -12.30, z-score = -1.72, R) >droEre2.scaffold_4770 1131582 50 - 17746568 ------------ACUUCCUCCUC----CACCUUCCGUCUUGGCAGCCAUGUCCUCAUUGAGCUGUU ------------...........----.............((((((((((....)).)).)))))) ( -7.20, z-score = -0.71, R) >consensus AC_UCCUUUUCCACCUCCACUUGCAAUUCCCCUACGUCCUGGCAGCCAUGUCCUCAUUGAGCUGUU ........................................((((((((((....)).)).)))))) ( -7.20 = -7.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:28 2011