| Sequence ID | dm3.chr3R |
|---|---|
| Location | 840,720 – 840,783 |
| Length | 63 |
| Max. P | 0.944614 |
| Location | 840,720 – 840,783 |
|---|---|
| Length | 63 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 96.77 |
| Shannon entropy | 0.04373 |
| G+C content | 0.43704 |
| Mean single sequence MFE | -16.83 |
| Consensus MFE | -16.80 |
| Energy contribution | -16.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.87 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 840720 63 + 27905053 UGCUUUGCUUUUGCUCGACAGCAAUGUUGGAUGUUGCUGAUGGCAGCCGCAUUAUUGGUUUUU .(((.(((..((((.((.(((((((((...))))))))).))))))..))).....))).... ( -16.90, z-score = -0.47, R) >droSim1.chr3R 875735 60 + 27517382 ---UUUGCUUUUGCUCGACAGCAAUGUUGGAUGUUGCUGAUGGCAGCCGCAUUAUUGGUUUUU ---..(((..((((.((.(((((((((...))))))))).))))))..)))............ ( -16.80, z-score = -1.07, R) >droSec1.super_6 977608 60 + 4358794 ---UUUGCUUUUGCUCGACAGCAAUGUUGGAUGUUGCUGAUGGCAGCCGCAUUAUUGGUUUUU ---..(((..((((.((.(((((((((...))))))))).))))))..)))............ ( -16.80, z-score = -1.07, R) >consensus ___UUUGCUUUUGCUCGACAGCAAUGUUGGAUGUUGCUGAUGGCAGCCGCAUUAUUGGUUUUU .....(((..((((.((.(((((((((...))))))))).))))))..)))............ (-16.80 = -16.80 + 0.00)
| Location | 840,720 – 840,783 |
|---|---|
| Length | 63 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 96.77 |
| Shannon entropy | 0.04373 |
| G+C content | 0.43704 |
| Mean single sequence MFE | -13.80 |
| Consensus MFE | -13.80 |
| Energy contribution | -13.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 840720 63 - 27905053 AAAAACCAAUAAUGCGGCUGCCAUCAGCAACAUCCAACAUUGCUGUCGAGCAAAAGCAAAGCA ............(((...((((..((((((.........))))))..).)))...)))..... ( -13.80, z-score = -1.23, R) >droSim1.chr3R 875735 60 - 27517382 AAAAACCAAUAAUGCGGCUGCCAUCAGCAACAUCCAACAUUGCUGUCGAGCAAAAGCAAA--- ............(((...((((..((((((.........))))))..).)))...)))..--- ( -13.80, z-score = -1.91, R) >droSec1.super_6 977608 60 - 4358794 AAAAACCAAUAAUGCGGCUGCCAUCAGCAACAUCCAACAUUGCUGUCGAGCAAAAGCAAA--- ............(((...((((..((((((.........))))))..).)))...)))..--- ( -13.80, z-score = -1.91, R) >consensus AAAAACCAAUAAUGCGGCUGCCAUCAGCAACAUCCAACAUUGCUGUCGAGCAAAAGCAAA___ ............(((...((((..((((((.........))))))..).)))...)))..... (-13.80 = -13.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:27 2011