| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,304,084 – 6,304,161 |
| Length | 77 |
| Max. P | 0.701315 |
| Location | 6,304,084 – 6,304,161 |
|---|---|
| Length | 77 |
| Sequences | 4 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 80.25 |
| Shannon entropy | 0.31830 |
| G+C content | 0.31315 |
| Mean single sequence MFE | -15.27 |
| Consensus MFE | -7.18 |
| Energy contribution | -9.68 |
| Covariance contribution | 2.50 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.701315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6304084 77 + 23011544 AAUAAUUAUACUUAAUUAUAAUAUAUUG----GCAAAACAUAAAUCGAAUCUGGCUGGAAUAUGCCAACUUCGACUGCAAA .(((((((....))))))).........----............(((((..((((........))))..)))))....... ( -13.90, z-score = -2.64, R) >droSim1.chr2L 6108928 81 + 22036055 ACUAAUUGUACUUAAUUAUAAUGUAUUGACUGGCAAAACAUAAGUCGAAUCUGGUUGGAAUAUGCCAACUUCGACUGCAAA .....((((...........((((.(((.....))).)))).((((((....((((((......)))))))))))))))). ( -18.70, z-score = -2.98, R) >droSec1.super_5 4375023 81 + 5866729 ACUAAUUGUACUUAAUUAUAAUGUAUUGACUGGCAAAACAUAAGUCGAAUCUGGCUGGAAUAUGCCAACUUGGACUGCAAA .....((((...........((((.(((.....))).)))).((((.((..((((........))))..)).)))))))). ( -16.80, z-score = -2.09, R) >droYak2.chr2L 15723238 66 - 22324452 AAUAAUUAUACUUAAUUAAAAUGUAUUGACUGGCAAAACACAAAACGAAGCUGGUUCGAA--UGCAAA------------- ..((((((....))))))...(((((((((..((...............))..)))..))--))))..------------- ( -11.66, z-score = -2.38, R) >consensus AAUAAUUAUACUUAAUUAUAAUGUAUUGACUGGCAAAACAUAAAUCGAAUCUGGCUGGAAUAUGCCAACUUCGACUGCAAA ..((((((....))))))..((((.(((.....))).)))).(((((((..((((........))))..)))))))..... ( -7.18 = -9.68 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:21:02 2011