| Sequence ID | dm3.chr3R |
|---|---|
| Location | 826,185 – 826,291 |
| Length | 106 |
| Max. P | 0.850909 |
| Location | 826,185 – 826,291 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 67.08 |
| Shannon entropy | 0.53381 |
| G+C content | 0.51223 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -15.62 |
| Energy contribution | -14.75 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 826185 106 + 27905053 GCCAAAACUACCAGCUAAUGGCCAUCGAAACA-CGGCGGAUGUGCGAGCACGAAACGUGCUUUCCGAAUGGCCAAAUGGCGAAAUGGUCAAAACCAAAGCAAACCCA---- ((...........((((.(((((((((...((-((.....)))).(((((((...)))))))..)).)))))))..))))....((((....))))..)).......---- ( -31.50, z-score = -1.81, R) >droYak2.chr3R 1174328 109 + 28832112 UCCAAUACUACCAACAAAUUGCCAUCUGAGCG-CGGCGGAUGUGCGAGCACUAAACGUGCUUUCCGAAUGGCCAAAUGGCGAAAUUGCCAAAACC-CAGCAAACCCGGCAA ..................(((((((.((.((.-...((((.....((((((.....))))))))))....)))).)))))))..(((((......-..........))))) ( -29.29, z-score = -0.75, R) >droEre2.scaffold_4770 1121679 100 + 17746568 ------ACUACCAACAAAUGGUCAUUCAAACG-CGGCGGAUGUGCGAGCACGAAACGUGCUUUCCGAAUGGCCAAAUGGCGAAAUUGCCAAAACCAUAGCAAACCCA---- ------............(((((((((...((-((.......))))((((((...))))))....)))))))))..(((((....))))).................---- ( -29.10, z-score = -1.63, R) >droAna3.scaffold_13340 23042451 84 + 23697760 GCUGAAACUGC-AAUUGGGAGCCAUCCGUUCGGCAGCGGAUGUGU-AGUACAAAACGUGCUCUUCCAAUGGCCAA--GACCAGACGAC----------------------- .(((.....((-.((((((((.(((((((......)))))))...-(((((.....))))))))))))).))...--...))).....----------------------- ( -26.30, z-score = -1.30, R) >consensus GCCAAAACUACCAACAAAUGGCCAUCCAAACG_CGGCGGAUGUGCGAGCACGAAACGUGCUUUCCGAAUGGCCAAAUGGCGAAAUGGCCAAAACC__AGCAAACCCA____ ..............(((...((((((((........)))))).))((((((.....))))))........(((....)))....)))........................ (-15.62 = -14.75 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:26 2011