| Sequence ID | dm3.chr3R |
|---|---|
| Location | 796,515 – 796,662 |
| Length | 147 |
| Max. P | 0.783424 |
| Location | 796,515 – 796,626 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.49 |
| Shannon entropy | 0.40227 |
| G+C content | 0.41960 |
| Mean single sequence MFE | -28.75 |
| Consensus MFE | -19.80 |
| Energy contribution | -19.42 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670247 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 796515 111 + 27905053 CAAAAUAGAUUGCGUGUAAUAGGUGGCGCGAUAUA---CAGUUAUCAGGGCUGCAUAGGUCUUGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGAAUUGAGUCUGGUUAA------ .....((((((.(((((........))))).....---......((((((((.....)))))))).((((((((((..(((((...)))))..)))))))))))))))).....------ ( -34.90, z-score = -2.39, R) >droSim1.chr3R 842610 111 + 27517382 UGAAAAAGAUGGCGUGUAAUAGGUGGCGUGAUACA---CAUUUAUCAUGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGUAUUGAGUCUGGUUAA------ ......................(..((((((((..---....)))))).))..)......(..((.((((.(((((..(((((...)))))..))))).))))..))..)....------ ( -27.20, z-score = 0.06, R) >droSec1.super_6 926658 97 + 4358794 --------------UGAAAAAGAUGGCGUGAUAUA---CAUUUAUCAUGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGUAUUGAGUCUGGUUAA------ --------------..........(.(((((((..---....))))))).).........(..((.((((.(((((..(((((...)))))..))))).))))..))..)....------ ( -25.70, z-score = -1.13, R) >droEre2.scaffold_4770 1092703 102 + 17746568 --------------UGAAAUAGAUGGCGUAAAAUAUUACAUAUAUCAGGGCUCCGUAAGUC---AGUGAUUCA-CGUUAUCUGCCAUAGAUGGCGUUGAGUUGGGCUGUGAUAAUUACAA --------------.............((((....))))...(((((.((((((....)..---...((((((-(((((((((...))))))))).))))))))))).)))))....... ( -27.20, z-score = -1.50, R) >consensus ______________UGAAAUAGAUGGCGUGAUAUA___CAUUUAUCAGGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGAAUUGAGUCUGGUUAA______ ........................(((.....................((((.....)))).....((((((((((..(((((...)))))..)))))))))).)))............. (-19.80 = -19.42 + -0.37)
| Location | 796,552 – 796,662 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.23 |
| Shannon entropy | 0.53313 |
| G+C content | 0.42850 |
| Mean single sequence MFE | -31.76 |
| Consensus MFE | -16.18 |
| Energy contribution | -17.30 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 796552 110 + 27905053 GUUAUCAGGGCUGCAUAGGUCUUGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGAAUUGAGUCUGGUUAAUAGUA----------CUUGCAGCAAUGGUUGUUGCCAGUUACAACA (((.((((((((.....)))))))).((((((((((..(((((...)))))..)))))))))).............(((----------((.((((((.....)))))).)).)))))). ( -36.60, z-score = -2.29, R) >droSim1.chr3R 842647 110 + 27517382 UUUAUCAUGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGUAUUGAGUCUGGUUAAUAGUA----------CUUGGAACAAUGGUUGUUGAGCGUUGCAACA ........((((.....))))((.((((.((((((((.....((((....))))(((((.(..((((((.....))).)----------))..).)))))..)))))))))))).))... ( -32.40, z-score = -1.41, R) >droSec1.super_6 926681 110 + 4358794 UUUAUCAUGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGUAUUGAGUCUGGUUAAUAGUA----------CUUGGAACAAUGGUUGUUGAGCGUUGCAACA ........((((.....))))((.((((.((((((((.....((((....))))(((((.(..((((((.....))).)----------))..).)))))..)))))))))))).))... ( -32.40, z-score = -1.41, R) >droYak2.chr3R 1140850 104 + 28832112 --------------AUAA-UCAGGGAUGCAUCAACGAAAUACGCCAUAGAUGGCGUUGAAUCGGGCCUGGAUAUUUAUAACUUUUUGUACUUGGAAUAAUACUGGUUGAGCGUGACAAA- --------------....-...(..((((.(((((((...((((((....))))))....))...((.((.(((..(......)..))))).))..........)))))))))..)...- ( -22.00, z-score = -0.31, R) >droEre2.scaffold_4770 1092729 116 + 17746568 UAUAUCAGGGCUCCGUAAGUC---AGUGAUUCA-CGUUAUCUGCCAUAGAUGGCGUUGAGUUGGGCUGUGAUAAUUACAACUUUUCGUCCUCGGAAUAAUGGUUGGGAAGCGUGCUGAUA ..((((((.(((((...((((---...((((((-(((((((((...))))))))).)))))).))))..........(((((.....((....)).....))))))))...)).)))))) ( -35.40, z-score = -1.50, R) >consensus UUUAUCAGGGCUGCAUAAGUCUGGAGCGAUUCAACGAAGUCUGCCAUAGAUGGCGUUGAAUUGAGUCUGGUUAAUAGUA__________CUUGGAACAAUGGUUGUUGAGCGUUACAACA ....................(((((.((((((((((..(((((...)))))..))))))))))..)))))...............................(((((........))))). (-16.18 = -17.30 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:23 2011