| Sequence ID | dm3.chr3R |
|---|---|
| Location | 795,313 – 795,365 |
| Length | 52 |
| Max. P | 0.993513 |
| Location | 795,313 – 795,365 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 75.66 |
| Shannon entropy | 0.33525 |
| G+C content | 0.29640 |
| Mean single sequence MFE | -11.13 |
| Consensus MFE | -8.22 |
| Energy contribution | -8.67 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.62 |
| SVM RNA-class probability | 0.993513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 795313 52 + 27905053 -----------AAUCAUGUUCACGGUAUGCUGCAAAACUUCCCUUUAACGUUUUGUACCUUAA -----------............(((.....(((((((...........)))))))))).... ( -6.30, z-score = -0.81, R) >droSec1.super_6 925721 63 + 4358794 AAUCAUAUUUUUAACUCAAUAACGGUAUGCUGCAAAAUGUUACUUUAACGUUUUGUACCUUAA ...(((((..(((......)))..))))).((((((((((((...))))))))))))...... ( -12.20, z-score = -3.16, R) >droSim1.chr3R 841700 63 + 27517382 AAUCAUAUUUUUAACUCAAUAAAGGUAUGCUGCAAAAUGUUACUUUAACGUUUUGUACCUUAA ...((((((((((......)))))))))).((((((((((((...))))))))))))...... ( -14.90, z-score = -4.25, R) >consensus AAUCAUAUUUUUAACUCAAUAACGGUAUGCUGCAAAAUGUUACUUUAACGUUUUGUACCUUAA .......................(((.....((((((((((.....))))))))))))).... ( -8.22 = -8.67 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:21 2011