| Sequence ID | dm3.chr3R |
|---|---|
| Location | 792,668 – 792,810 |
| Length | 142 |
| Max. P | 0.777472 |
| Location | 792,668 – 792,810 |
|---|---|
| Length | 142 |
| Sequences | 3 |
| Columns | 145 |
| Reading direction | forward |
| Mean pairwise identity | 61.39 |
| Shannon entropy | 0.51697 |
| G+C content | 0.31726 |
| Mean single sequence MFE | -28.17 |
| Consensus MFE | -8.59 |
| Energy contribution | -9.27 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777472 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 792668 142 + 27905053 UUUAUUUGUUUUUAUCACCUCCUACCAUCUUGUUUGCUAAUUUCCAGAUUGCUAAAGCCGUGAGAACUAGCAAACCAAAUCUAUUUGUUUGUUUUUUGG--ACUCAUAAAUU-AGAACUUUUAGGGGUGACGACUUAUGCCCUAU ..(((..(((....(((((.((((.......((((((((.((..((....((....))..))..)).))))))))....(((((((((..(((.....)--))..))))).)-))).....))))))))).)))..)))...... ( -29.60, z-score = -1.76, R) >droSec1.super_6 922996 120 + 4358794 UUUAUUUGUUUUUAUCACCUCCUACCAUCUUGUUUGCUAAUUUCCAG-----------------------CAAACAAAAUCUAUUUGUUUGUUUUUUAA--ACUCAUAAAAUGAGAACAUUAAGGGGUGACGACUUAUGCCCUAU ..(((..(((....(((((.(((......(((((((((.......))-----------------------)))))))........(((((...(((((.--.....)))))...)))))...)))))))).)))..)))...... ( -25.10, z-score = -2.98, R) >droYak2.chr3R 1132431 124 + 28832112 UUAAUUUGUUUU--CUAUCUUUCAUUUGAAAAUGUAGUAAACGCUACAU----------------ACAUCCGUAAGAAAUUUACAUGUGAGUUUUCUGGGGAUUUAUCAAAAAAUAACAAUUAGGGGUGAC---UUAAACCCCAU ............--..........(((((..(((((((....)))))))----------------..((((.((..(((((((....)))))))..)).))))...)))))............(((((...---....))))).. ( -29.80, z-score = -2.87, R) >consensus UUUAUUUGUUUUUAUCACCUCCUACCAUCUUGUUUGCUAAUUUCCAGAU________________AC___CAAACAAAAUCUAUUUGUUUGUUUUUUGG__ACUCAUAAAAU_AGAACAUUUAGGGGUGACGACUUAUGCCCUAU .......(((((...................(((((........))))).....................((((((((.....))))))))......................))))).....(((((..........))))).. ( -8.59 = -9.27 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:20 2011