| Sequence ID | dm3.chr3R |
|---|---|
| Location | 781,801 – 781,892 |
| Length | 91 |
| Max. P | 0.537404 |
| Location | 781,801 – 781,892 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 87.45 |
| Shannon entropy | 0.24395 |
| G+C content | 0.47853 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -18.68 |
| Energy contribution | -18.53 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 781801 91 + 27905053 -CUUAGAUGGGGAGUCGUGUGUUGACAACCUGUUAACUCUGAAAAUUGUGCUGACGGAUUGCAUAAUGGCGAUCGCCGGGCGAAAAGCUUUC -.......((.((.(((((.((((((.....)))))).).....(((((((.........))))))).)))))).))((((.....)))).. ( -23.50, z-score = -0.57, R) >droSim1.chr3R 827531 91 + 27517382 -CUUAGAUGGGGAGUCGUGUGUUGACAACCUGUUAACUCUGAAAAUUGUGCUGGCGGAUUGCAUAAUGGCGAUCCCCUGGCGAAAAGCUUUC -....((((((..((((.....))))..))))))......((((.((.(((..(.(((((((......))))))).)..)))...)).)))) ( -28.70, z-score = -2.35, R) >droSec1.super_6 912449 91 + 4358794 -CUUUGAUGGGGAGUCGUGUGUUGACAACCUGUUAACUCUGAAAAUUGUGCUGGCGGAUUGCAUAAUGGCGAUCCCCUGGCGAAAAGCUUUC -..((((((((..((((.....))))..))))))))....((((.((.(((..(.(((((((......))))))).)..)))...)).)))) ( -30.30, z-score = -3.00, R) >droYak2.chr3R 1121560 92 + 28832112 GCUUAGAUGGGGGGUCGUGUGUUGACAACCGGUUAACUCUAAAAAUUGUGCUGGCGGAUUGAAUAAUGGCAAUCCCCUGGCGAAAAGCUUUC ((((.(((.((..((((.....))))..)).)))..............(((..(.((((((........)))))).)..)))..)))).... ( -28.60, z-score = -1.93, R) >droEre2.scaffold_4770 1078665 91 + 17746568 -CUUAGAUGGGGAGUCGUGUGUUGACAACCUGUUAACUCUGAAAAUUGUGCUGGCGGAUUGCAUAAUGGCGAUCGCCUGGCGAAAAGCUUUC -....((((((..((((.....))))..))))))......((((.((.((((((((.(((((......))))))))).))))...)).)))) ( -26.70, z-score = -1.61, R) >droAna3.scaffold_13340 23001091 85 + 23697760 -CUUUGGUGGGG-GUCGUGUGUUGACAAUCUGCUAACUCUGGGAGUUGUAUAAUAUGAU---AUGAU--CCGUCCGAUGGCGAAAAGCUUUC -..((((((((.-(((((((....((((.((.(((....))).))))))...)))))))---....)--))).)))).(((.....)))... ( -22.40, z-score = -1.27, R) >consensus _CUUAGAUGGGGAGUCGUGUGUUGACAACCUGUUAACUCUGAAAAUUGUGCUGGCGGAUUGCAUAAUGGCGAUCCCCUGGCGAAAAGCUUUC .....((((((..((((.....))))..))))))......((((.((.((((((.(((((((......)))))).)))))))...)).)))) (-18.68 = -18.53 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:19 2011