| Sequence ID | dm3.chr3R |
|---|---|
| Location | 778,309 – 778,378 |
| Length | 69 |
| Max. P | 0.722431 |
| Location | 778,309 – 778,378 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 79.52 |
| Shannon entropy | 0.39681 |
| G+C content | 0.37558 |
| Mean single sequence MFE | -10.08 |
| Consensus MFE | -5.80 |
| Energy contribution | -5.55 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 778309 69 - 27905053 UCGGUUUUCGUUCCAGCUCUAUACCACUGCUGCCCGAGUUUGCCCUCAAUUAAAAAUAAAUUACAAAAU ..(((.((((...((((...........))))..))))...)))......................... ( -10.30, z-score = -1.80, R) >droEre2.scaffold_4770 1075628 68 - 17746568 UCGAUUUUUGUUCCAGCUCUAUACCACUGCUGCCCGAG-UUGUCCUCAAUUAAAAAUAAAUUACAAAAU .....((((((..((((...........))))...(((-.....)))...............)))))). ( -8.10, z-score = -1.69, R) >droYak2.chr3R 1118208 69 - 28832112 UCGAUUUUUGUUCCAGCUCUAUACCACUGCUGCCCGAGUUUGUCCUCAAUUAAAAAUAAAUUACAAAAU .....((((((..((((...........))))...(((......)))...............)))))). ( -8.30, z-score = -1.75, R) >droSec1.super_6 908688 69 - 4358794 UCGGUUUUCGUUCCAGCUCUAUACCACUGCUGCCCGAGUUUGCCCUCAAUUAAAAAUAAAUUACAAAAU ..(((.((((...((((...........))))..))))...)))......................... ( -10.30, z-score = -1.80, R) >droSim1.chr3R 823696 69 - 27517382 UCGGUUUUCGUUCCAGCUCUAUACCACUGCUGCCCGAGUUUGCCCUCAAUUAAAAAUAAAUUACAAAAU ..(((.((((...((((...........))))..))))...)))......................... ( -10.30, z-score = -1.80, R) >droGri2.scaffold_14906 1982231 66 + 14172833 UCGACAGACACAACUUCAAUAUACCUCU--UUAUUGACAUUGACCUUCGUCAAUGG-GUUCAAGAAGAU .............((((.....(((((.--.....))(((((((....))))))))-))....)))).. ( -13.20, z-score = -1.62, R) >consensus UCGAUUUUCGUUCCAGCUCUAUACCACUGCUGCCCGAGUUUGCCCUCAAUUAAAAAUAAAUUACAAAAU ..(((.((((...((((...........))))..))))...)))......................... ( -5.80 = -5.55 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:18 2011