| Sequence ID | dm3.chr3R |
|---|---|
| Location | 760,841 – 760,927 |
| Length | 86 |
| Max. P | 0.944939 |
| Location | 760,841 – 760,927 |
|---|---|
| Length | 86 |
| Sequences | 13 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 74.05 |
| Shannon entropy | 0.60065 |
| G+C content | 0.51001 |
| Mean single sequence MFE | -25.88 |
| Consensus MFE | -13.81 |
| Energy contribution | -12.44 |
| Covariance contribution | -1.37 |
| Combinations/Pair | 2.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.944939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 760841 86 + 27905053 CUUUGGCAAUGAGCAAUUACAACCAGAUACGGUAAGCUGUCUUAGCUCUACGCUAAGUGCAGCCUCGUGCCUAUCGUCCUCGUUAA ....((((.((((........(((......)))..(((((((((((.....)))))).)))))))))))))............... ( -26.10, z-score = -2.39, R) >droSim1.chr3R 801865 86 + 27517382 CUUUGGCAAUGAGCAAUUACAACCAGAUACGGUAAGCUGUCUUAGCUCUACGCUAAGCGCAGCCUCUUGCCUAUCGUCCUCGUUAA ....(((((.(((........(((......)))..(((((((((((.....)))))).)))))))))))))............... ( -26.30, z-score = -2.60, R) >droSec1.super_6 860310 86 + 4358794 CUUUGGCAAUGAGCAAUUACAACCAGAUACGGUAAGCUGUCUUAGCUCUACGCUAAGUGCAGCCUCUUGCCUAUCGUCCUCGUUAA ....(((((.(((........(((......)))..(((((((((((.....)))))).)))))))))))))............... ( -26.30, z-score = -2.77, R) >droYak2.chr3R 1082351 86 + 28832112 UUUCGGCAAUGAGCAAUUACAACCAGAUACGGUAAGCUGUCUUAGCUCUACGCUAAGUGCAGCCUCUUGCCUUUCGUCCUCGCUAA ....(((((.(((........(((......)))..(((((((((((.....)))))).)))))))))))))............... ( -26.60, z-score = -2.72, R) >droEre2.scaffold_4770 1059102 86 + 17746568 CUUUGGCAACGAGCAGUUACAACCUGAUACGGUGAGCUGCCUUAGCUCUACGCUAAGUGCAGCCUCUUGCCUUUCGUCCUCGUUAA ....(((((.(((........(((......)))..(((((((((((.....)))))).)))))))))))))............... ( -28.90, z-score = -2.54, R) >droAna3.scaffold_13340 22972471 86 + 23697760 CUUUGGCAGCGAGCAACUGCAGCCAGAUCCGGUCAGCUGCCUCAGCUCCACUCUGAGCGCAGCUUCCUGCUUGUCGUCAUCGCUGA ...((((.(((((((.(((....)))....((..(((((((((((.......))))).)))))).))))))))).))))....... ( -33.00, z-score = -0.93, R) >dp4.chr2 8762184 86 - 30794189 CUUUGGCAGCGAGCAAAUCCAGCCCGACACGGUCAGCUGUCUCAGCUCCACCCUGAGUGCUGCCUCGUGUCUGUCGUCUUCGCUGA ......((((((((.......))..(((((((.((((...(((((.......))))).)))).).))))))........)))))). ( -31.30, z-score = -1.72, R) >droPer1.super_3 2562478 86 - 7375914 CUUUGGCAGCGAGCAAAUCCAGCCCGACACGGUCAGCUGUCUCAGCUCCACCCUGAGUGCUGCCUCGUGUCUGUCGUCUUCGCUGA ......((((((((.......))..(((((((.((((...(((((.......))))).)))).).))))))........)))))). ( -31.30, z-score = -1.72, R) >droWil1.scaffold_181130 8220536 86 - 16660200 CUUUGGCAGCGAGCAAAUUCAACCAGAUACAGUUAGCUGUCUUAGUUCUACAUUGAGUGCAGCUUCAUGCUUAUCAUCAUCGCUUA .......((((((......).....((((.(((.((((((((((((.....)))))).))))))....)))))))....))))).. ( -19.10, z-score = -0.41, R) >droMoj3.scaffold_6540 23733742 86 + 34148556 UUUCGGCAGCGAGGAUCUACAAUUGGAUACAGUUAGCUGCUUGAGCACUACGCUAAGUGCUGCUUCCUGCCUGUCCUCAUCGUUUA ....(((((.(((((((((....))))).(((....)))....((((((......)))))).)))))))))............... ( -24.40, z-score = -0.66, R) >droGri2.scaffold_15074 5116420 86 + 7742996 UUUUGGUAGCGAACAAUUGCAAUUGGAUACAGUUAGUUGCCUGAGCUCAACAUUGAGUGCCGCAUCCUGUUUGUCGUCCUCGUUUA ....((..(((((((..((((((((....)))))..........(((((....)))))...)))...)))))))..))........ ( -19.30, z-score = -0.09, R) >droVir3.scaffold_12855 8534643 86 + 10161210 UUUUGGCAGCGAGCAUAUACAAUUAGAUACGGUUAGCUGCCUAAGCUCCACACUGAGCGCUGCCUCCUGCUUGUCUUCAUCAUUUA ....((((((....................(((.....)))...((((......))))))))))...................... ( -20.60, z-score = -0.28, R) >anoGam1.chr2R 60241362 84 - 62725911 -CGUACGAGACCGCCGUUAC-GUACGACAAUGCGACCUGUCUGAGUGGUGCGCUUGGUCCGACAAGCUGCCUCAAGUCCACGUUCG -.(((((.(((....))).)-))))((((........))))...((((.(((((((......))))).)).......))))..... ( -23.30, z-score = 0.71, R) >consensus CUUUGGCAGCGAGCAAUUACAACCAGAUACGGUAAGCUGUCUUAGCUCUACGCUAAGUGCAGCCUCCUGCCUGUCGUCCUCGUUAA ....(((((.(((........(((......)))..((.(((((((.......))))).)).))))))))))............... (-13.81 = -12.44 + -1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:14 2011