| Sequence ID | dm3.chr3R |
|---|---|
| Location | 745,572 – 745,667 |
| Length | 95 |
| Max. P | 0.663584 |
| Location | 745,572 – 745,667 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 91.55 |
| Shannon entropy | 0.11600 |
| G+C content | 0.32867 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -11.13 |
| Energy contribution | -11.47 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 745572 95 + 27905053 AACUAAAAUACUACCAAAUUUCAGUUCACAAAUUCUUGUGACUUUUUUCCGUGGUAAAUCAAAUGUCCACAUCAGCUAAAAUUAUUUUUCUCGCC ................(((((.(((((((((....)))))).........((((............))))....))).)))))............ ( -11.70, z-score = -1.79, R) >droSec1.super_6 841661 94 + 4358794 AACUAAAAUACUACCAAAUU-CAGUUCACAAAUCCUUGUGACUUUGUUCCGUGGUAAAUUAAAUAUCCACAUCAGCUGCAAUCCUUUAUCUUGAC ........((((((..(((.-.(((.(((((....))))))))..)))..))))))....................................... ( -13.10, z-score = -1.49, R) >droSim1.chr3R 786170 94 + 27517382 AACUAAAAUACUACCAAAUU-CAGUUCACAAAUCCUUGUGACUUUGUUCCGUGGUAAAUUAAAUAUCCACAUCAGCUGAAAUCCUUUUUCUUGAC ..................((-((((((((((....)))))).........((((............))))....))))))............... ( -15.10, z-score = -2.11, R) >consensus AACUAAAAUACUACCAAAUU_CAGUUCACAAAUCCUUGUGACUUUGUUCCGUGGUAAAUUAAAUAUCCACAUCAGCUGAAAUCCUUUUUCUUGAC ........((((((..(((...(((.(((((....))))))))..)))..))))))....................................... (-11.13 = -11.47 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:12 2011