| Sequence ID | dm3.chr3R |
|---|---|
| Location | 736,164 – 736,215 |
| Length | 51 |
| Max. P | 0.536517 |
| Location | 736,164 – 736,215 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 69.87 |
| Shannon entropy | 0.48770 |
| G+C content | 0.38725 |
| Mean single sequence MFE | -11.90 |
| Consensus MFE | -4.60 |
| Energy contribution | -4.72 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.536517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 736164 51 + 27905053 UAACGUUUUUGGCCUGAAACAAAUCGAUGAU--GUUGCGAAGCACAAUCGAUA ....(((((......)))))..((((((..(--(((....))))..)))))). ( -12.10, z-score = -1.81, R) >droSec1.super_6 832370 51 + 4358794 UAACGUUUUUAACCUGAUGUCAAUCGAUGGU--GUUGCUAAGCACAAUCGAUA ..(((((........)))))..((((((.((--(((....))))).)))))). ( -13.40, z-score = -2.53, R) >droSim1.chr3R 776909 51 + 27517382 UAACGUUUUUAACCUGAUGUCAAUCGAUGGU--GUUGCUAAGCACAAUCGAUA ..(((((........)))))..((((((.((--(((....))))).)))))). ( -13.40, z-score = -2.53, R) >droGri2.scaffold_15074 5086324 51 + 7742996 UAACGGCCUUAAC--AGCACUUAUCGAUAUCUAGUUAACAGCAGCUGUCGAUA .....((......--.))...((((((((.((.((.....)))).)))))))) ( -8.70, z-score = -0.68, R) >consensus UAACGUUUUUAACCUGAUACCAAUCGAUGGU__GUUGCUAAGCACAAUCGAUA ......................((((((.....(((....)))...)))))). ( -4.60 = -4.72 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:11 2011