| Sequence ID | dm3.chr3R |
|---|---|
| Location | 730,085 – 730,182 |
| Length | 97 |
| Max. P | 0.828302 |
| Location | 730,085 – 730,182 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 74.28 |
| Shannon entropy | 0.33822 |
| G+C content | 0.31447 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -11.51 |
| Energy contribution | -11.07 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 730085 97 + 27905053 UGAAUUGAUCCAAGAAAAUAUCUCAUAAAGAUAUAGAUGGAAAUUCGAGAUAUUUUUAAGAGGUUAGUAUCCAGUAAUGUAUAUAGGGCCUCGAAAC .............((((((((((((((....))).(((....))).)))))))))))..((((((.((((.((....)).))))..))))))..... ( -20.90, z-score = -2.08, R) >droSim1.chr3R 770647 82 + 27517382 UGGAAUGAUCUAAGAAAAUGUCUCAUAAAGAUAUAGAUGAAAAUUCGAGAUAUUUUCAAAGCAAAAGUAUCCAGCUCGAAAC--------------- ((((.........((((((((((((((....))).(((....))).)))))))))))...((....)).)))).........--------------- ( -15.00, z-score = -1.76, R) >droSec1.super_6 826214 82 + 4358794 UGGAAUGAUCUAAGAAAAUGUCUCAUAAAGAUAUAGAUGAAAAUUCGAGAUAUUUUCAAAGCAAGCGUAUCCAGCUCGAAAC--------------- (((((((..((..((((((((((((((....))).(((....))).)))))))))))..))....))).)))).........--------------- ( -16.30, z-score = -1.79, R) >consensus UGGAAUGAUCUAAGAAAAUGUCUCAUAAAGAUAUAGAUGAAAAUUCGAGAUAUUUUCAAAGCAAAAGUAUCCAGCUCGAAAC_______________ .............((((((((((((((....))).((.......)))))))))))))........................................ (-11.51 = -11.07 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:10 2011