Locus 8684

Sequence ID dm3.chr3R
Location 702,407 – 702,496
Length 89
Max. P 0.838056
window11920

overview

Window 0

Location 702,407 – 702,496
Length 89
Sequences 5
Columns 89
Reading direction reverse
Mean pairwise identity 77.05
Shannon entropy 0.40431
G+C content 0.40915
Mean single sequence MFE -22.80
Consensus MFE -15.58
Energy contribution -17.74
Covariance contribution 2.16
Combinations/Pair 1.36
Mean z-score -1.51
Structure conservation index 0.68
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.86
SVM RNA-class probability 0.838056
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 702407 89 - 27905053
AAGAUUGCUUCCAUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUGGAUAAGCAAGAGCUUGUCCAUGAAGGUGGAUCAG
.....((..(((((..((.............((((((((...))))))))..((((((((((....))))))))))))..))))).)). ( -28.70, z-score =  -3.07, R)
>droSim1.chr3R 750516 89 - 27517382
AAGAUAUCUUCCUUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUAGAUAAGCAAGAGAUGAGCCACGGAGGUGGGUCAG
............((((((((((((((...((.(((((((...)))))))))...))))))))))))))(((.((((....)))).))). ( -31.80, z-score =  -3.89, R)
>droSec1.super_6 806031 89 - 4358794
AAGAUAGCUUCCUUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUAGAUAAGCAAGAGAUGAGCCACGGAGGUGGGUCAG
............((((((((((((((...((.(((((((...)))))))))...))))))))))))))(((.((((....)))).))). ( -31.80, z-score =  -3.72, R)
>droYak2.chr3R 1026330 87 - 28832112
CAGCUAGCUUCCUUUCCGAUUU-UUUUUAA-UAUGCUCUUCAGCACUAUGUUAUAGGUGAACAAGACUUGAUGCACGAGGGUGGACCAG
.........(((...((.....-.......-.....((((...((((........))))...))))((((.....)))))).))).... ( -12.30, z-score =   1.90, R)
>droEre2.scaffold_4770 1008163 86 - 17746568
AAGCUUCCUUUCCAUUUUUUUUUUUUUUA---AUGCUCUUCAGGACUGUGCAACACAUGAACACGACUUGAUCCACGAAACUGGGCCAG
..((((..((((((((............)---)))....(((((.((((.((.....)).))).).))))).....))))..))))... (  -9.40, z-score =   1.21, R)
>consensus
AAGAUAGCUUCCUUUCUUGUUUGUUUUUAACUAUGGUCCUCAGGACUAUGUAAUAGAUAAGCAAGAGAUGAUCCACGAAGGUGGGUCAG
..............((((((((((((.....((((((((...))))))))....))))))))))))..((((((((....)))))))). (-15.58 = -17.74 +   2.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:09 2011