| Sequence ID | dm3.chr3R |
|---|---|
| Location | 697,685 – 697,750 |
| Length | 65 |
| Max. P | 0.957507 |
| Location | 697,685 – 697,750 |
|---|---|
| Length | 65 |
| Sequences | 9 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 80.25 |
| Shannon entropy | 0.39456 |
| G+C content | 0.51450 |
| Mean single sequence MFE | -18.87 |
| Consensus MFE | -10.99 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.957507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 697685 65 + 27905053 GCUGAACGCGUUUAUAAAUUGACGGCGGAAACUGCCGUCGACUGUGACUCGACUCAUAGACAGCC- ((((..............(((((((((....).))))))))((((((......)))))).)))).- ( -25.90, z-score = -4.75, R) >droSim1.chr3R 745824 65 + 27517382 GCUGAACGCGUUUAUAAAUUGACGGCGGAAACUGCCGUCGACUGCGACGCGACUCAUAGACAGCC- ((((..((((((......(((((((((....).))))))))....)))))).(.....).)))).- ( -26.30, z-score = -4.28, R) >droSec1.super_6 801369 65 + 4358794 GCUGAACGCGUUUAUAAAUUGACGGCGGAAACUGCCGUCGACUGCGACGCAACUCAUAGACAGCC- ((((...(((((......(((((((((....).))))))))....)))))..(.....).)))).- ( -24.30, z-score = -3.84, R) >droYak2.chr3R 1021946 60 + 28832112 GCUGAACGCGUUUAUAAAUUGAAGGAGGAAACUGCCGUCGACUGCGAC-----UCAUAGACAGCC- .......((((((((........((((....)).))((((....))))-----..)))))).)).- ( -15.40, z-score = -1.58, R) >droEre2.scaffold_4770 1002850 65 + 17746568 GCCGAACGCGUUUAUAAAUUGACGGAGGAAACUGCCGUCGACUGCUCAUAGACUCAUAGACAGCG- ......(((((((((...(((((((((....)).)))))))(((....)))....)))))).)))- ( -20.30, z-score = -2.84, R) >droAna3.scaffold_13340 22914315 61 + 23697760 GCUGAACGCGUUUAUAAAUUGACGACGGAAACUGCCGUCGACUGCGAC-----UCAUAGACAAGGU ((.....))((((((.(.(((.((((((......))))))....))).-----).))))))..... ( -15.10, z-score = -1.32, R) >droWil1.scaffold_181130 8499108 54 + 16660200 ACUGAACGCGUUUAUAAAUUGACGACGGAAACUGCUGUCGAGAGU-----------CAAACUGCC- .......((((((.....((((((.((....).).))))))....-----------.)))).)).- ( -10.30, z-score = -0.58, R) >droVir3.scaffold_12855 8462464 57 + 10161210 ACCGAACGCGUUUAUAAAUUGACGUCGGAAACUGGCGUCGAGUGC--------UCAGAGGAGGCC- .......((.........(((((((((....).))))))))...(--------((....))))).- ( -16.10, z-score = -0.56, R) >droMoj3.scaffold_6540 23670224 57 + 34148556 ACUGAACGCGUUUAUAAAUUGACGUCGGAAACUGGCGUCGAGUGC--------UCAUAGGAGGCC- .......((.........(((((((((....).))))))))...(--------((....))))).- ( -16.10, z-score = -1.17, R) >consensus GCUGAACGCGUUUAUAAAUUGACGGCGGAAACUGCCGUCGACUGCGAC_____UCAUAGACAGCC_ ..................(((((((((....).))))))))......................... (-10.99 = -11.20 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:08 2011