| Sequence ID | dm3.chr3R |
|---|---|
| Location | 680,302 – 680,354 |
| Length | 52 |
| Max. P | 0.883747 |
| Location | 680,302 – 680,354 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 96.86 |
| Shannon entropy | 0.04723 |
| G+C content | 0.27854 |
| Mean single sequence MFE | -4.80 |
| Consensus MFE | -4.80 |
| Energy contribution | -4.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 680302 52 - 27905053 AUUUUUCAGUUCC-UUUACAAAUUUGACCAAGUUUCCAAACGUAGUUAAAUAC .............-.......(((((((...(((....)))...))))))).. ( -4.80, z-score = -1.22, R) >droSim1.chr3R 726446 53 - 27517382 AUUUUUCAGUUCCUUUUAUAAAUUUGACCAAGUUUCCAAACGUAGUUAAAUAC .....................(((((((...(((....)))...))))))).. ( -4.80, z-score = -1.36, R) >droSec1.super_6 783916 53 - 4358794 AUUUUUCAGUUCCCUUUAUAAAUUUGACCAAGUUUCCAAACGUAGUUAAAUAC .....................(((((((...(((....)))...))))))).. ( -4.80, z-score = -1.54, R) >consensus AUUUUUCAGUUCC_UUUAUAAAUUUGACCAAGUUUCCAAACGUAGUUAAAUAC .....................(((((((...(((....)))...))))))).. ( -4.80 = -4.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:07 2011