| Sequence ID | dm3.chr3R |
|---|---|
| Location | 653,060 – 653,154 |
| Length | 94 |
| Max. P | 0.634436 |
| Location | 653,060 – 653,154 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 79.72 |
| Shannon entropy | 0.38293 |
| G+C content | 0.43023 |
| Mean single sequence MFE | -26.58 |
| Consensus MFE | -13.36 |
| Energy contribution | -14.27 |
| Covariance contribution | 0.91 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.634436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 653060 94 + 27905053 UUGGUCUGGUCAGUGGC-----GCACAGAGUAUUCGGUUUUUCGGUUGCUUUUGCUUCGUUUCGAGUGAGCCAAAUCGCAGGCCAUAAUUUUUUAUUAU .((((((((....((((-----(((.((((((..(((....)))..)))))))))((((...))))...))))...).))))))).............. ( -28.70, z-score = -2.73, R) >droSim1.chr3R 697603 94 + 27517382 UUGGCCUGGUCAGUGGC-----GCACAGAGUAUUCGGGUUUUCGGUUGCUUUCGCUUCGUUUCGAGUGAGCCAAAUCGCAGGCCAUAAUUUUUUAUUAU .((((((((....((((-----.....(((((..(((....)))..)))))((((((......))))))))))...).))))))).............. ( -30.50, z-score = -2.57, R) >droSec1.super_6 758073 94 + 4358794 UUGGCCUGGUCAGUGGC-----GCGCAGAGUAUUUGGUUUUUCGGUUGCUUUCGCUUCGUUUCGAGUGAGCCAAAUCGCAGGCCAUAAUUUUUUAUUAU .((((((((....((((-----(((.((((((.((((....)))).)))))))))((((...))))...))))...).))))))).............. ( -31.10, z-score = -2.55, R) >droYak2.chr3R 972895 93 + 28832112 UUGGCCUGGUCAGUGGCACUGCGCACUGUGUAUUUAGUUUUU-GGUUGCUUU-----CGUUUUGAGUGAGCCAAAUCGCAGGCUAUAAUUUUUUAUUAU .(((((((..(((((((...)).)))))...........(((-((((((((.-----......)))).)))))))...))))))).............. ( -26.20, z-score = -1.58, R) >droEre2.scaffold_4770 960243 94 + 17746568 UUGGCCUGGUCAGUGGC-----GCACUGUGUAUUCAGUUUUUCGGUUGCUUUCGCUUCGUUUCGAGUGAGCCGAAUCGCAGGCCAUAAUUUUUUAUUAU .((((((((....((((-----((((((..............))).)))..((((((......))))))))))...).))))))).............. ( -28.34, z-score = -1.98, R) >droWil1.scaffold_181130 8118366 82 - 16660200 --------UUUAGUGUAUGUAUGUAC-GAGUAAUUUCCUUUU-GGUCAGUGUC----UGGUU--AGUGCGCCAAAUCGU-GGCCAUAAUUUUUUAUUAU --------.....(((((....))))-)(((((........(-(((((..((.----((((.--.....)))).))..)-))))).......))))).. ( -14.66, z-score = -0.59, R) >consensus UUGGCCUGGUCAGUGGC_____GCACAGAGUAUUCGGUUUUUCGGUUGCUUUCGCUUCGUUUCGAGUGAGCCAAAUCGCAGGCCAUAAUUUUUUAUUAU .(((((((....(((........))).................((((((((............)))).))))......))))))).............. (-13.36 = -14.27 + 0.91)
| Location | 653,060 – 653,154 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 79.72 |
| Shannon entropy | 0.38293 |
| G+C content | 0.43023 |
| Mean single sequence MFE | -20.83 |
| Consensus MFE | -7.60 |
| Energy contribution | -10.17 |
| Covariance contribution | 2.57 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 653060 94 - 27905053 AUAAUAAAAAAUUAUGGCCUGCGAUUUGGCUCACUCGAAACGAAGCAAAAGCAACCGAAAAACCGAAUACUCUGUGC-----GCCACUGACCAGACCAA ..............(((.(((.....((((.(((..........((....))...((......))........))).-----)))).....))).))). ( -17.40, z-score = -1.47, R) >droSim1.chr3R 697603 94 - 27517382 AUAAUAAAAAAUUAUGGCCUGCGAUUUGGCUCACUCGAAACGAAGCGAAAGCAACCGAAAACCCGAAUACUCUGUGC-----GCCACUGACCAGGCCAA ..............(((((((.....((((.(((..........((....))...((......))........))).-----)))).....))))))). ( -28.20, z-score = -4.28, R) >droSec1.super_6 758073 94 - 4358794 AUAAUAAAAAAUUAUGGCCUGCGAUUUGGCUCACUCGAAACGAAGCGAAAGCAACCGAAAAACCAAAUACUCUGCGC-----GCCACUGACCAGGCCAA ..............(((((((.....((((.(..(((...))).((....)).......................).-----)))).....))))))). ( -24.30, z-score = -2.90, R) >droYak2.chr3R 972895 93 - 28832112 AUAAUAAAAAAUUAUAGCCUGCGAUUUGGCUCACUCAAAACG-----AAAGCAACC-AAAAACUAAAUACACAGUGCGCAGUGCCACUGACCAGGCCAA ................(((((.(((((((...........(.-----...).....-.....))))))...(((((.((...))))))).))))))... ( -18.10, z-score = -1.39, R) >droEre2.scaffold_4770 960243 94 - 17746568 AUAAUAAAAAAUUAUGGCCUGCGAUUCGGCUCACUCGAAACGAAGCGAAAGCAACCGAAAAACUGAAUACACAGUGC-----GCCACUGACCAGGCCAA ..............(((((((.(.(((((.....(((...))).((....))..)))))............(((((.-----..))))).)))))))). ( -28.10, z-score = -4.24, R) >droWil1.scaffold_181130 8118366 82 + 16660200 AUAAUAAAAAAUUAUGGCC-ACGAUUUGGCGCACU--AACCA----GACACUGACC-AAAAGGAAAUUACUC-GUACAUACAUACACUAAA-------- ............((((...-(((((((((......--..)))----))......((-....)).......))-)).))))...........-------- ( -8.90, z-score = -0.71, R) >consensus AUAAUAAAAAAUUAUGGCCUGCGAUUUGGCUCACUCGAAACGAAGCGAAAGCAACCGAAAAACCAAAUACUCUGUGC_____GCCACUGACCAGGCCAA ..............(((((((.....((((..............((....))...............(((...)))......)))).....))))))). ( -7.60 = -10.17 + 2.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:02 2011