| Sequence ID | dm3.chr3R |
|---|---|
| Location | 652,816 – 652,912 |
| Length | 96 |
| Max. P | 0.929491 |
| Location | 652,816 – 652,912 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 72.15 |
| Shannon entropy | 0.58700 |
| G+C content | 0.51255 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -12.74 |
| Energy contribution | -12.26 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 652816 96 + 27905053 ------GCGUCCUGCCCGACCACUCCCCUUUCG-----UCCCUUCAACUGCAACG-AGGAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCGGGGACUCCACUG ------..(((((..(((...........((((-----(..(.......)..)))-))(((.(((((((........))))))).)))...)))..)))))....... ( -23.90, z-score = -0.77, R) >droSim1.chr3R 697360 96 + 27517382 ------GCCCCCUGCCCGACCACUCCCUUUUCG-----UCUCUUCAACUGCAACG-AGGAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCGGGGACUCCACUG ------...(((((((.............((((-----(..(.......)..)))-))(((.(((((((........))))))).)))....)))))))......... ( -26.10, z-score = -2.01, R) >droSec1.super_6 757831 96 + 4358794 ------GACCCCUGCCCGACCACUCCCCUUUCG-----UCCCUUCAACUGCAACG-AGGAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCGGGGACUCCACUG ------...(((((((.............((((-----(..(.......)..)))-))(((.(((((((........))))))).)))....)))))))......... ( -26.20, z-score = -2.06, R) >droYak2.chr3R 972674 91 + 28832112 --------ACCCUGC---GGCACUCCCCUUCCG-----UCCGUUUAACUGCAACG-AGAAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCGGGGACUCCACUG --------.((((((---((......)).....-----..((((((((((..(((-.((...((((....)))))).)))..))))).)))))))))))......... ( -24.80, z-score = -1.51, R) >droEre2.scaffold_4770 960018 94 + 17746568 --------CCCCUGCCCGACCACUCCCCUUCCG-----UUCGUGCAACUGCAACG-AGGAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCGGGGAAUCCACUG --------.(((((((.................-----(((((((....)).)))-))(((.(((((((........))))))).)))....)))))))......... ( -29.40, z-score = -2.43, R) >droAna3.scaffold_13340 22872930 80 + 23697760 ----------------------UGCCCUUCUCG-----UCCUUUAAACUGCAACA-AGAAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCAGGGAAUCCACUG ----------------------..((((.(.((-----(........((......-))....(((((((........)))))))......)))).))))......... ( -14.00, z-score = -0.40, R) >dp4.chr2 8655519 107 - 30794189 CCCCUCUGCCCCCUCGAGGAUACCCACCAUAAGGAAGGUCCCUUCAACUGCAACG-AGAAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCAGGGAAUCCACUG ...(((((((.....((((..(((..((....))..)))..)))).........(-((....(((((((........))))))).)))....)))))))......... ( -29.30, z-score = -2.00, R) >droPer1.super_3 2456818 107 - 7375914 CCACUCUGCCCCCUCGAGGAUACCCACCAUAAGGAAGGUCCCUUCAACUGCAACG-AGAAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCAGGGAAUCCACUG ...(((((((.....((((..(((..((....))..)))..)))).........(-((....(((((((........))))))).)))....)))))))......... ( -29.50, z-score = -2.14, R) >droWil1.scaffold_181130 8118177 87 - 16660200 -------------------UCUUUUGCCAGAGG-ACAGCAUACAGAACUGCAAUG-AGGAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCAGGGAAUCCACUG -------------------(((((.(((...((-((.(((........))).(((-(.(..(((((....)))))..).)))).))))....))))))))........ ( -20.50, z-score = -1.21, R) >droVir3.scaffold_12855 8401943 102 + 10161210 -----AUAUAUGGGCCAGAACGAGAGCCAAGAG-UGUGGCCGAGAGACUGCAUUGGAGGAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCAGGGAAUCCUCUG -----.......(((((..((...........)-).)))))(((.((((((...(...(((.(((((((........))))))).)))...).))))....))))).. ( -26.30, z-score = -0.34, R) >droMoj3.scaffold_6540 23619761 89 + 34148556 -----------------ACGAGAGGGCCAAGGG-UGUGGCC-AGAGACUGCAUUGGAGGAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCAGGGAAUCCUCUG -----------------...(((((((((....-..)))))-.((..((((...(...(((.(((((((........))))))).)))...).))))....)))))). ( -28.00, z-score = -1.60, R) >consensus ________CCCCUGCC_GACCACUCCCCUUUCG_____UCCCUUCAACUGCAACG_AGGAAAUAUGAUGACAUAUCGCGUCAUAGUUCAAACGGCAGGGAAUCCACUG ...............................................((((......(((..(((((((........))))))).))).....))))........... (-12.74 = -12.26 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:00 2011