| Sequence ID | dm3.chr3R |
|---|---|
| Location | 644,962 – 645,054 |
| Length | 92 |
| Max. P | 0.509350 |
| Location | 644,962 – 645,054 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 64.69 |
| Shannon entropy | 0.68635 |
| G+C content | 0.52373 |
| Mean single sequence MFE | -33.95 |
| Consensus MFE | -7.63 |
| Energy contribution | -7.96 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.76 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 644962 92 + 27905053 UUCUAAUUGAAUCUGCUGAAGUGGUG------GAUGUCGCUGUGAGAACAGUGUCAUUCUGCACAGAGGCUACACGACUACGUUUUGCAGCUUCACUU .......((((.((((.(((((((((------((((.((((((....)))))).))))).((......))......))))).))).)))).))))... ( -29.60, z-score = -1.58, R) >droSim1.chr3R 689124 92 + 27517382 UACUGAUUGAAUCUGCUGAAGUGGUG------GAAGUCGCUGUCAGAAUAGUGGCAUUCUGCACAACAGCUACACGACUACGUUUAGCAGCUUCACUU .......((((.(((((((((((((.------(..((.(((((((((((......))))))....))))).)).).))))).)))))))).))))... ( -32.20, z-score = -2.63, R) >droSec1.super_6 749881 92 + 4358794 UACUGAUUGAAUCUGCUGAAGUGGCG------GAAGUCGCUGUGAGAACAGUGGCAUUCUGCACAACAGCUACACGACUACGUUUAGCAGCUUCACUU .......((((.(((((((.((.(((------(((((((((((....)))))))).))))))...))......(((....)))))))))).))))... ( -33.90, z-score = -2.99, R) >droYak2.chr3R 962979 92 + 28832112 UACGGAUUGAAUCUGCUGAGGAGGCG------GAUGUCGCUGUGAGAACAGUGACAUUCUGCAGAGAAGCUAUACGACUACGUUUUAUAGCUUCACAU ..((((....(((((((.....))))------)))((((((((....))))))))..))))....(((((((((.(((...))).))))))))).... ( -35.70, z-score = -4.67, R) >droEre2.scaffold_4770 952056 92 + 17746568 UACGGAUUGAAUCUGCUAAGGUGGCG------GAUGUCGCUGUGAGAACAGAGGCGUUCUGCACAGAAACUACUCGACUACGUUUUGUAGCUUCACUU .......((((.((((.((.((((((------(..((..((((((((((......))))).)))))..))...))).)))).))..)))).))))... ( -29.20, z-score = -1.78, R) >droAna3.scaffold_13340 22865062 88 + 23697760 ----------UACAGCUGGAGAUGUGCCUGGAGAGAUGCUUGAUGUGGUGGUGAGAGCUGCCACGGAAGCUUCACGACUGCGUUUGGCGGCUCCACCU ----------...((.(((((...((((......((.((((..(((((..((....))..))))).)))).))(((....)))..)))).))))).)) ( -34.20, z-score = -1.77, R) >dp4.chr2 8647796 95 - 30794189 CGCGGGGUGCUUUUCCCGGAGAGGUG---GAUGUGGUGACUGGUGUGGGAUUGGCAGCUGCGAGAGCUGCGGCACGACUGCGUUUCGCUGGUUCCCUU ((((.(.((((..(((((.(..(((.---(......).)))..).)))))..)))).))))).(((((((((.(((....))).)))).))))).... ( -35.90, z-score = 0.02, R) >droPer1.super_3 2448731 95 - 7375914 CGCGGGGUGCUCUUCCCGGAGAGGUG---GAUGUGGUGACUGGUGUGGGAUUGGCAGCUGCGGGAGCUGCGGCACGACUGCGUUUCGCUGGUUCCCUU .(((.(.((((..(((((.(..(((.---(......).)))..).)))))..)))).))))(((((((((((.(((....))).)))).))))))).. ( -40.90, z-score = -0.98, R) >consensus UACGGAUUGAAUCUGCUGAAGAGGUG______GAGGUCGCUGUGAGAACAGUGGCAUUCUGCACAGAAGCUACACGACUACGUUUUGCAGCUUCACUU .................((((..............((.((((......)))).)).............((((.(((....))).))))..)))).... ( -7.63 = -7.96 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:50:00 2011