| Sequence ID | dm3.chr3R |
|---|---|
| Location | 596,561 – 596,654 |
| Length | 93 |
| Max. P | 0.604664 |
| Location | 596,561 – 596,654 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 67.67 |
| Shannon entropy | 0.61331 |
| G+C content | 0.47542 |
| Mean single sequence MFE | -27.23 |
| Consensus MFE | -8.44 |
| Energy contribution | -9.58 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 596561 93 - 27905053 AUCGGAUCGGAGUCGCCCCGUCGGGUUGCG-------ACCCGCUGGGAUAAGAGUCCAUAAAUAAUC-AGCACUUGGGAUUUUCCGAUUCCCAAUUGUUUG ........(((.((..((((.(((((....-------))))).))))....)).)))..........-((((.((((((.........)))))).)))).. ( -31.70, z-score = -1.57, R) >droEre2.scaffold_4770 903101 93 - 17746568 AUCGCCUCGUAGGCGACCCGUUGGGUUGCG-------ACCCGCUUGGAUAACAGUCCACAAAUAAUA-AGCACUUCGGAUUCCCCAACUCCCAAUUGUUUG .(((((.....)))))...((((((.(.((-------(...((((((((....))))).........-)))...))).)...))))))............. ( -25.40, z-score = -1.70, R) >droYak2.chr3R 909662 99 - 28832112 GUCGCAUCGUAGUCGACCCGUUGGGUUUUACCGUUUUAUCCACUUGGAUAAAAGUCCAUUAA-AAUC-AGCACUUGGGAUUUUCCAAUUCCCAAUUGUUUG (((((......).))))......(((((((...((((((((....))))))))......)))-))))-((((.((((((.........)))))).)))).. ( -23.90, z-score = -2.10, R) >droSec1.super_6 697004 93 - 4358794 AUCGGAUCGGAGUCGCCCCGUCGGGUUGCG-------ACCCGCUGGGAUAAGAGUCCAUAAAUAAUC-AGCACUUGGUAUUUUCCGAUUCCCAAUUGUUUG ((((((..(((.((..((((.(((((....-------))))).))))....)).))).......(((-((...)))))....))))))............. ( -28.40, z-score = -1.15, R) >droSim1.chr3R 638348 93 - 27517382 UUCGGAUCGGAGUCGCCCCGUCGGGUUGCG-------ACCCGCUGGGAUAAGAGUCCAUAAAUAAUC-AGCACUUGGGAUUUUCCGAUUCCCAAUUGUUUG ........(((.((..((((.(((((....-------))))).))))....)).)))..........-((((.((((((.........)))))).)))).. ( -31.70, z-score = -1.61, R) >droGri2.scaffold_15074 4939071 91 - 7742996 ------CCGAGAGCAUUCUUCGGCUCUUCGGUUGUUCUUUUGCUCUCGUACUCUUUGAUUAUAAAUCAAAUAAAUUACGUUUGCAGACACU---UUGCAU- ------.((((((((.....(((((....)))))......)))))))).....((((((.....))))))...........((((((...)---))))).- ( -22.30, z-score = -3.00, R) >consensus AUCGGAUCGGAGUCGCCCCGUCGGGUUGCG_______ACCCGCUGGGAUAAGAGUCCAUAAAUAAUC_AGCACUUGGGAUUUUCCGAUUCCCAAUUGUUUG .....................(((((...........)))))...((((....))))...........((((.((((((.........)))))).)))).. ( -8.44 = -9.58 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:49:56 2011