Locus 867

Sequence ID dm3.chr2L
Location 6,283,000 – 6,283,120
Length 120
Max. P 0.628971
window1168

overview

Window 8

Location 6,283,000 – 6,283,120
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.64
Shannon entropy 0.11808
G+C content 0.40294
Mean single sequence MFE -32.02
Consensus MFE -25.37
Energy contribution -26.12
Covariance contribution 0.75
Combinations/Pair 1.12
Mean z-score -2.01
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.29
SVM RNA-class probability 0.628971
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 6283000 120 + 23011544
CCAGUCACGAGUCCAAUUAACCGAUUCUCCAUUGUCGAUUCUCGGCAUUCAAAAUGUCCUUUUUAUGGAUUUUAUCGGGAAUUGACGUCGGUUUUUUAUGAAAAUGUUUGCUUGUGGCAC
...(((((((((......(((((((........(((((((((((..(........((((.......))))..)..))))))))))))))))))...(((....)))...))))))))).. ( -35.60, z-score =  -3.09, R)
>droSim1.chr2L 6081141 120 + 22036055
CCAGUCACGAGUCCAAUUAACCGAUUCUCCAUUGUCGAUUCUCGCCAUUCAAAAUGUCCUUUUUAUGGAUUUUAUCGGGAAUUGACGGUGGUUUUUUAUGAAAAUGUUUGCUUGUGGCAC
...(((((((((................((((((((((((((((...........((((.......)))).....)))))))))))))))).....(((....)))...))))))))).. ( -36.69, z-score =  -3.40, R)
>droSec1.super_5 4354302 120 + 5866729
CCAGUCACGAGUCCAAUUAACCGAUUCUCCAUUGUCGAUUCUCGCCAUUCAAAAUGUUCUUUUUAUGGAUUUUAUCGGGAAUUGACGGCGGUUUUUUAUGAAAGUGUUUGCUUUUGGCAC
...(((..(((((.........))))).((.(((((((((((((((((..(((......)))..)))).......))))))))))))).))........((((((....))))))))).. ( -28.01, z-score =  -0.81, R)
>droEre2.scaffold_4929 15210571 119 + 26641161
CCAGUCACGAGUCCAAUUAACCGAUUCUCCAUUGUGGAUUCUUGGCAUUCAAAAUGCCCUUCU-AUGGAAUUUAUCGGCGAUUGACGGCGGUUUUUCAUAAAAAUGUUUGCUUUUGACAC
...((((.((((.(((((..(((((..(((((...(((.....(((((.....)))))..)))-)))))....))))).)))))..((((.((((....)))).)))).)))).)))).. ( -27.80, z-score =  -0.74, R)
>consensus
CCAGUCACGAGUCCAAUUAACCGAUUCUCCAUUGUCGAUUCUCGCCAUUCAAAAUGUCCUUUUUAUGGAUUUUAUCGGGAAUUGACGGCGGUUUUUUAUGAAAAUGUUUGCUUGUGGCAC
...(((((((((.((.............((.(((((((((((((.(((.....)))(((.......)))......))))))))))))).)).............))...))))))))).. (-25.37 = -26.12 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:56 2011